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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_SHC_all.Contig2138
Contig Information
Length 853 bp
Tissue Shoot grown with cold treatment
Clones 5 Clones [Download: CSV  ,  FASTA ]
whsc19b18    whsc20a05    rwhsc5c04    rwhsc19b18    rwhsc20a05   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os02g0519900 [Oryza sativa (japonica cultivar-group)] >gi|49387779|dbj|BAD26337.1| putative elongation factor 2 [Oryza sativa Japonica Group] >gi|113536503|dbj|BAF08886.1| Os02g0519900 [Oryza sativa (japonica cultivar-group)] >gi|119395216|gb|ABL74569.1| elongation factor 2 [Oryza sativa (japonica cultivar-group)] >gi|125539668|gb|EAY86063.1| hypothetical protein OsI_07431 [Oryza sativa Indica Group] >gi|125582310|gb|EAZ23241.1| hypothetical protein OsJ_006724 [Oryza sativa (japonica cultivar-group)]
Score 1141
Evalue 5.48679e-123
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_SHC_all.Contig2138
TAAGTAAAACATCCGTTACATCACCAGACATCAAAACATAGTTCCCAGTATCACGACAAGTAGGTCATAACAGCAAGACTCATCGATACAAAATAGTGCA
GCTCTCTTTAACAACACAAGACCAGGTAAGGGATAACAGCACCAAAAATTTAGAGCTTGTCCTCGAAATCGGATAGAGGGGTCATCTGCTCCTTGAGGCC
CTTCCTCTTGCGGATATCCGTGACGAGCGTCGCCGACTGGGTGCCTGGGTCCAAAGGATCAGAAGCCATGATGTCCCAGTGGTCAAACACACACTGGGGG
AAGGCCTGGCCGGACGTCGCGGCCCTCAGGGTGCTTGAGAACCCAAAGGATTCAATGACGGGGAGGTAGGCCTTGATGTTGTAGAGCGGGGTACCTTGCC
TCTGCATCTCCTCGAACACGTGCCCTCTCTTCTGATTCAGAACACCATAGATACCACCAAGCGCATTCTCCGGGGCCTGGATCTCAACCAGGTACACAGG
CTCCAGCAGCCTTGGCTTGGCAGTCAGCTGAGAAGCATAAATGACCCTCCTGGCCGTGGGAATGACCTGACCACCACCCCTGTGGATAGCATCAGTGTGG
AGAACAACATCACAGACCTCAAAGCAAATGCCACGCATGTTCTCCTCAGCCAGTGCACCTTCCTTCGACGCCCACTGGAACCCANCCACAACAGAGTCCT
TGATTTCATTAAGATACTGCACTCCCTTACACATGTCAACAACCATGTTGGGGCCAGTCGTCTCANGTCCAAAGCACCAAATCTTCTTGGCAAGATCCTT
GTCCCANCCAAACTCCTCANACAGGATCTTANACCGCACCTTANGATCNTCAC
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