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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

whfl_all.Contig1796
Contig Information
Length 863 bp
Tissue Spikelet (at early flowering) full length cDNA
Clones 14 Clones [Download: CSV  ,  FASTA ]
rwhfl14f11    rwhfl15h04    rwhfl50e21    rwhfl49j12    rwhfl15e11    rwhfl14f12    rwhfl50e22    whfl38k16    whfl10b21    whfl14f12    whfl50e21    whfl14f11    whfl49j12    whfl49f12   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os06g0115500 [Oryza sativa (japonica cultivar-group)] >gi|7248415|dbj|BAA92738.1| putative 60S ribosomal protein L13E [Oryza sativa Japonica Group] >gi|24413953|dbj|BAC22205.1| putative 60S ribosomal protein L13E [Oryza sativa Japonica Group] >gi|113594653|dbj|BAF18527.1| Os06g0115500 [Oryza sativa (japonica cultivar-group)] >gi|125553806|gb|EAY99411.1| hypothetical protein OsI_21382 [Oryza sativa Indica Group] >gi|125595832|gb|EAZ35612.1| hypothetical protein OsJ_019095 [Oryza sativa (japonica cultivar-group)] >gi|149391053|gb|ABR25544.1| 60S ribosomal protein l13-2 [Oryza sativa (indica cultivar-group)] >gi|215678596|dbj|BAG92251.1| unnamed protein product [Oryza sativa Japonica Group]
Score 813
Evalue 6.04911e-85
Total Hit Count 302
Registered year
Contig Sequence     [ Download ]
>whfl_all.Contig1796
cactCATAGGATAAGATTTGATAGCAGATCATGCAAATAAGTATATCAGGTATCAAACAAGATGTCCGAGAAGGCCAAAACAGAAATTCAGAAACTAGCA
CTTGATAACAACAGAACCCACTAGCTGCCTTAAGCATCTCATCACTTCTTCTCCTCCTTCTCCGCCTCGGCAGCCTTCTTCTGCCTGGCTCCCAACTGGC
GCTGGTTCATCCTCTCGACGCGGAGCTTGCCATAGGCCTTGAACTCCTTCATCTCCTCTGTGACCTTCACGACCTCGACTGAGCGCTTCTCGCCACGGGC
AATGGGCATGTAGTCACCCTGGACCTGTGTGGCGTTGGCAAGCTCCTCCGGAGTAGAGTCACCAGCCTTGACCTTGCGAGCACGCCTTGGGAAGATAACA
AGCTTGGCCTTGTAGGTCTTGAGCCGCTGGATATTGGACTGCATACCCTCAAGCGACCTGTTCTTGCGGCGATGGTCCACAGAAATGCCAATGGTCGGAG
CGAGCTTCTTTGGGATGCCAGCGGACTTAAGCTCCTCAAGGGTAAATCCTCTGCCAGCCCTGGCCTTCATGTTGTACTT*GCGGGTCTGGCATTGCACAA
TGGGG*CGAAGAGGTCCAGAGGTAGGGCGGGGGAAGATCTTCACAGCATTCTTCTGGCGAGCGATGCGACGCCTCTGCTTGCGGGCGGGCTGGTTGAACC
ACGT*CTTGACATAGTTCTGCCAGTGCTTCTTGAAGTGGCCGTTGGGGATGACGTTGTTGTGCTTCACCATCTCGCCCTCCTCTCCTCCTCCTTACCTGG
AGACGACGGTGCGGCGGCGGCGCGGGGGAGGGCTAGGGTTTTGCGGGGGAGTGGAGCGGCGgc
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