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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig16093  (registered. 2007)
Contig Information
Length 992 bp
Clones 51 Clones [Download: TSV  ,  FASTA ]
Wh Spike at meiosis 16
Wh_SL Seed DPA30 4
Wh_e Seed DPA10 4
Wh_f Spike at flowering date 5
Wh_oh Pistil at heading date 6
Wh_r Root 4
Wh_yf Spikelet at early flowering 12
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os05g0489600 [Oryza sativa (japonica cultivar-group)] >gi|1703380|sp|P51823|ARF2_ORYSJ RecName: Full=ADP-ribosylation factor 2 >gi|1132483|dbj|BAA04607.1| ADP-ribosylation factor [Oryza sativa Japonica Group] >gi|13646976|dbj|BAB41081.1| ADP-ribosylation factor [Triticum aestivum] >gi|23304413|emb|CAD48129.2| ADP-ribosylation factor 1-like protein [Hordeum vulgare subsp. vulgare] >gi|50511366|gb|AAT77289.1| ADP-ribosylation factor [Oryza sativa (japonica cultivar-group)] >gi|113579443|dbj|BAF17806.1| Os05g0489600 [Oryza sativa (japonica cultivar-group)] >gi|125552797|gb|EAY98506.1| hypothetical protein OsI_20417 [Oryza sativa Indica Group] >gi|125594700|gb|EAZ34759.1| hypothetical protein OsJ_018242 [Oryza sativa (japonica cultivar-group)] >gi|215692842|dbj|BAG88186.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215695044|dbj|BAG90235.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215767619|dbj|BAG99847.1| unnamed protein product [Oryza sativa Japonica Group]
Score 859
Evalue 3.79366e-96
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>Contig16093
gctctcctcctttcTCTCCTCCTCCTGCCCCGATCCCGAACCGGG*AGGAACCCGGCGCGAGG*AGGGCAAAGGAAGAGAAGAGGAGACCACCGAGCCCA
GCGCGCGCACACGACAGCAGGCGCCGCGATCTCGCGCAGGAGCGGAGATGGGGCTCACGTTCACGAAGCTGTTCAGCCGGCTCTTCGCCAAGAAGGAGAT
GAGGATCCTCATGGTCGGTCTCGATGCGGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGAGAGATCGTCACCACCATCCCCACAATCGGGTTT
AATGTCGAAACTGTAGAGTACAAGAACATTAGTTTCACCGTTTGGGATGTCGGGGGTCAGGACAAGATCAGGCCCCTGTGGAGGCACTACTTCCAGAACA
CCCAGGGTCTCATTTTT*GTCGTGGACAGCAATGACAGAGAGCGTGTTGTTGAGGCAAGAGATGAGCTTCACCGGATGCTGAATGAGGATGAGCTGCGTG
ATGCTGTGCTGCTGGTGTTTGCAAACAAG*CAAGATCTTCCTAATGCCATGAATGCTGCTGAAATCACTGACAAGCTTGGCCTGCATTCCCTGCGCCAGC
GACACTGGTACATCCAGAGCACATGTGCTACCTCTGGGGAGGGGGTTGTACGAGGGCCTTGACTGGCTGTCCAACAACATTGCCAACAAGGCTTGAAGCA
TCTCGGCAGGGGCTTCTATGGATCTGGATAAGCTGGATATTCGGACTAATACTGCCTTTACGTATTATAAACTATATAGTCTTGACAGATAATGTGGGTG
TTTTGGAAAGATAAAGCTCTC*TGTCAAAGAGCTAGCTATCAGATTGTTTTC*GTGGGTGTTAAATTGTCCGTGGCGCTGTTTGTTTGCCCATCATGGCT
TTACTATGTCCGCT*CTGTACT*CTGTACTCGCCACT*CCGACAGA*CTTGATA*CATTGTAGTATTGACTTGTCTTGGCAtaaaaaaaaaa
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