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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig9088  (registered. 2012)
Contig Information
Length 3489 bp
Clones alternative view 216 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 10
Wh_dL Crown of seedling 4
Wh_e Seed DPA10 3
Wh_f Spike at flowering date 1
Wh_h Spike at heading date 3
Wh_oh Pistil at heading date 5
Wh_r Root 2
Wh_yd Spikelet at late flowering 8
Wh_CSEC Callus 7
Wh_DPA20 Seed DPA20 3
Wh_EM Dormant seed with water absorption 5
Wh_EMI Dormant seed with water absorption after breaking 12
Wh_KMP Shoot grown under continuous light 4
Wh_KMV Shoot grown with continuous light after cold treatment 2
Wh_MS Seed DPA5 of DT3DL CS wheat 3
Wh_OKCS Seed DPA5 6
Wh_RDr Root of dessiccated seed 6
Wh_SHC Shoot grown with cold treatment 4
Wh_SHDr Shoot grown with dessication 2
Wh_V4816 Shoot grown under cold condition for 16days 2
Wh_VHS Shoot with heat shock treatment 2
Wh_VSCB Liquid cultured tissue 7
Wh_VWD Shoot grown with dessication 1
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 2
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 3
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 1
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 1
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 1
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 3
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 1
WH_XR Roots, 18 day old plants were grown hydroponically 2
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 3
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 6
WH_SP 10
WH_XA Root 6
WH_XB Root 8
WH_XC Root, treated at 50 microM Al for 6h 23
WH_XD Root, treated at 50 microM Al for 6h 12
WH_XE Seedling, infected with leaf rust 1
WH_XF Seedling, infected with leaf rust 3
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 9
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 14
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115447405|ref|NP_001047482.1|| Os02g0626400 [Oryza sativa (japonica cultivar-group)]
Score 1325
Evalue 0
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig9088
TATGACAGAGCACAAGAATGCAATAGTAACATGCATTACCCTATTGCAAAGTGAAATGAGCATTCCCGGTAATAGATAAGACATATAATGACAGAACAGA
ACGACACATTCAACATCTCCAAATTTGTCTGAACAGGAATTGGTTTCATAGAAGACAAGCATCAGGCAAGTCCTTGCCGCTACATCAAAATGTTCTTTCA
TCACAAACTTAAAGCATAGCTAAAACAGTTCTAGATATCTTGTAAAACACATTCATTCCAAAATCTCCAGCCAAAAGCACGAGACCCTCAGATGCACATC
CATCTTAACGGTTAGCCTTGGCAACACGCTCAATCTCGTCCTTCTTCTTGATGGCATAGCTGTTGGATGAGCCCTTGGCAGCATTGATCAGCTCATCAGC
GAGGCACTCAGCAATGGTCTTGACGTTCCTGAAGGCGCTCTCCCTGGCACCAGTAGTCAGAAGGTAGATGGCCTGGTTCACCCTCCTGAGGGGAGAGATA
TCCACAGCCTGTCTCCTCACAACACCAGCAGACCCAATACGGGTAGCATCCTCACGTGGACCACTGTTGATGATGGCATCAACGATGATCTGGATGGGGT
TGGCGTCGGTGAGGAGGTGGATGATCTCCATGGTGTGCTTGATGATGCGGACGGCCATGATCTTCTTCCCGTTGTTGCGCCCGTGCATCATGAGGGAGTT
GGTGAGGCGCTCGATGATGGGGCACTGCGCCTTGCGGAAGCGCTTGGCCGAGTAGCGGCCGGCCGAGTGCGGCAGGAACGTGTAGTGCTTCATCGACGTC
ACCGCGAGGTAGTCGTTCAGCGAGATGTCGGTCACCTGAACATCCTCGAAGGTCCAGCGGTTGAAGAGCTTCACGTCGCCCCCGGGCACCGGCTCCACGA
CCGCCATGGCTGAGGGTGTGGTGGGGGAGGGGAGGTGGCGGCGGCGGGTGCAGGAGAGTTGGAAAACCTAGTGGAATCGGCTTTTTGAAACAAAGTAATG
TACTTAAGCTCCCATCATACAAGTTACAACAACACAAGTTTGAGAAGCTGCCTGCCTCGCCTGCTCATGGCATGGCGGCAGCGAGAAAAAACAACAGTAA
CATCAACTTAACTAAGTACAATGAACGTAGATATACCAGGAACCTCCCGCTTCACAGTCTTGAACACTTCTATATTCACTTTGTGTGTACGTGTTTTCTT
TTCCTTTGGTGTTACCTTCTCTCGTCGACTGCTCAGCAGAGCGGCAGGGGCTCGCCGTTCCACTCCTTGAGGCACTCGAGCAGCGGGTCGATGTGCTTGC
GCTCGTTCATGGCCACCAGCACCTTGTTCAGCTCCTCCCCGGGCGACCGTGTCTTCTCGCCGGTCAGGTACTCGGTGCCGCACACCTCGCGCACGAACTG
GTAGAGCGGGTAGGAGCGGCAGTCCTTGATCCGGTTCGGAGCCAGCGGCGTGCCGTTCTCCACGGACGCGCGCGCGGCCTCCACCTCCTTGGGCAGCGCC
GCGCGGATGTTCTGCTCGAACTCCGCCACCTTGGCGAAGATGGAGGTCTCCAGGGCGCGCTCGCCGTCGCCGTTGGCCAGCGCGTGCTCCACCAGCACCG
CCCGCAGCTTCTGCATCAGCGGGTAGTTGGGGCTGCACGGGTCGTCCGCGTACGCGAACACCGCCTCGCGGTCGATCGCGGTCAGCAGATCCTTCTCGCA
GAAGCGGGCGATGTGGAGGCCGCCCATGTTGTTCATGCTCAGGGTCTTCTTGGCCACCTGCATCACGCAGTTCCTCACCGCTGTCTTCATGTTCTCCTCA
ATGTGGCGAAGATCAATGGCCTGGCACAGGGCGACCAGGAACGTGGAGGACATGATCTTCAAGATGTCAATAGCCTCGGCGGTCTTCCTGGATGAGATCA
GACCAAGTGAGTTCACATCCTGGTTGTGCTGCTCCGCGCTCTGGACATGGTTAGTCACCGGGTTGCCCAAGAACTGCAGCTCAGAGCAGTATGAGGCCAT
GGCGATCTCGGCGCCCTTGAAACCATAGTCCAAGCTCGGGTTGCGTCCACCGGACAGGTTGGATGGCAGGCCATTGTTGTAGAAGTCGTTCACCAGCTCC
GAGAACTGCGCGAACATCAGCTTGCCAATAGCAGCAATGGCGAGGCGGGTGTTGTCCATGGAGACACCGATGGGGGTGCCTTGGAAGTTGCCACCGTGGA
TGGCCTTGCCACGGGAGACGTCGATGAGCGGGTTGTCGTTGACGGAGTTGATCTCACGCTCAATCGACTTGGTGGCAAAGCGAATAACTTCGATTTGTGG
GCCAAGCCACTGAGGCGAAGTGCGGAGGGCATACCGGTCCTGCTTCGGCTTCATCAACGGGTCGAGCTCGCCAAGCTTCTTTGCCTGCTTCATGTATGAG
CTTCCCTCCAAAATGTGCTCCATGATTGCAGCCGCTTCTATCTGTCCAGGGTGGTGCTTCAGCTTGTGGGTCAAGTGGTCAGTGAACTCCGGCTTGCCGT
TCATCACCTCGCAGAACACGGCAGACAAGACCTCGGCAAGCACGGAAAGAACATTTGCCTCAAAGAGCACGGTCGATGCAAGACCAGAGCCCACAGCCGT
GCCGTTCACCATGGCAAGGCCTTCCTTGGGCTGCAGCTCAAAGAACCCGTGCTCGATCCCGGCGATCTTGAATGCCTCGGCAGCAGTCACCTTGCTGCCA
TCAGGGGCCACCGCAACAGAGTTCTGTCGGCCGGTGATGAGGCCGGCAATGTAGGACAGCGGCACAAGGTCACCGGATGCGGTGATGGTGCCCCGGAGCG
GCAAGCACGGCGTGACATTGGCATTGAGCAGCTTGGTGATAGCCTCGAGGATCTCGAAGCGGATGCCGGAGTAACCCTGCAGGAGGGTGTTGATGCGGAC
GAGCATAGCCGCGCGTGTCGCCTCGGCGGGCAGAACGTGTCCGTCCGTGCCAGTTCCGAAGGCACCGGCGTTAAGGAACCTGATGAGCTCTCTCTGGAGC
GCGCCGCCCTCCTTGGTCCGGCGGTGGGAGGTGGCCCCGAAGCCGGTGGTGACGCCGTAGCTGTCGGTGCCGTTCATCATGCTGGTCATGACCCAGTCGC
TGCTCTCCTTGACGCGGCCGCGGGCGGACTCGTCGAGCGCGACCCTGGCGACGCCGGCGCCGGCGGCCACGGCGGCCACCTGCGCGATCCCGAGGGAGGC
GCCCTCGATGGTCACCAGCGGCTCGCGGAACTGCGCCACCATCTTCTTCACCTCCTCGAGGTGGCTCCCGGTGAGCTCCTCGGCGGTCTTCACCCAGTTT
AGGGGGTCGGCGCGGGGGGCCGACATACAGAGCCCCTCGCCGTTGAGGGAGCCGACGAGGCCGGTCTCGCACTCCATTGCAGGTTACACAACAGATGGAA
CAAAAACAATGCAGGGAGAGGTACAAGCACGACAGATGTGGGGGGAGCTACCACTGCTAGTACTTAATCGCGTACGTTTATAGATAGAT
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