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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig19272  (registered. 2003)
Contig Information
Length 1535 bp
Clones 7 Clones [Download: TSV  ,  FASTA ]
Wh_CSEC Callus 1
Wh_DPA20 Seed DPA20 2
Wh_OKCS Seed DPA5 2
Wh_V4816 Shoot grown under cold condition for 16days 2
Homology (BLAST) Top Hit geranylgeranyl-diphosphate synthase [Zea mays] >gi|1346033|sp|P49353|FPPS_MAIZE RecName: Full=Farnesyl pyrophosphate synthetase; Short=FPP synthetase; Short=FPS; AltName: Full=Farnesyl diphosphate synthetase; Includes: RecName: Full=Dimethylallyltranstransferase; Includes: RecName: Full=Geranyltranstransferase >gi|33340602|gb|AAQ14871.1|AF330036_1 farnesyl diphosphate synthase [Zea mays] >gi|662368|gb|AAB39276.1| farnesyl pyrophosphate synthetase >gi|194702348|gb|ACF85258.1| unknown [Zea mays] >gi|194708184|gb|ACF88176.1| unknown [Zea mays] >gi|195623932|gb|ACG33796.1| farnesyl pyrophosphate synthetase [Zea mays]
Score 1023
Evalue 1.81003e-168
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig19272
AAGTTGAAGAACTACCATGGGATTACACCTGCTAACTTCTCTAATGCAACAATATAAGAAAAGACCAAACGAAAGGGCAGGGTGCAAATTACAGAACCAT
CAGTCGTCTACACCAAAGCGGTCCATCAAACCCAAAATAGCGCCTTGCATCATTATTATTACTGGGAGCAGCAAGGCGCAACATACAACATGAAGCACTA
AACCATAAAATCAACACCACTAGTCATCTATCAAACATGCCACAATGGAACATATTTCCTGCCCAAGAGACACCCCCTACTTCTGCCTCATGTAGATCTT
GTGCAAGAAGGACTTCAGAACCTTCTGAACGGCAACGCTCGGCTGGGCTTCGATATCAGCAATCAGCTTCTTGTAGCTCTCGCTCTCGTACTCATGGAAT
ACCGCCTCAAGGTTAAGTTCTTTGTAGAGATCCTTCACTTTTGCCACGCATGCTGGATCTTTCTTTCCATAGTTTTCAAATAGAATGCTCTTTTGGCTCT
CATCAGCACGCTCAAGAGCTTGGACAACTAGCCAGGAGCACTTGTAATCTTCAATGTCGGTGCCAATCTTGCCAATAAATTCAGGATCACCATAACAGTC
TAGATAATCATCCTGAACTTGGGAAGTAAGTTCCCATCTCAACAAGTATGTTCTCTACAGCACTGTAGTTCTCCAAACTCTCGCCGGAGAGTAGCAGCGC
ACATGCAACCGGCAGATAAAATGAATAGTAGGCTGTCTTGAATTGAACAATTCGGCGGTGGACTCCAATGTTATATTTCGTTAGATCTTTTTCTCCCTCG
TGGGTTGTAATAAGGTCCAGCATTTGACCAGAAGCTGTCTTGAACTCAACCTCGTTGAATAAATCAAGGAGATCGGCATAGTAAGGCTTCTTCTTAAAGT
GGAGCCGAAGCATTCTCGAAATATGGTTGCGAAGGAGAATCCCATCATTTACAGCAATCAAGCCAACCTGAGACACCCTAAACCAACAAGGCTGCCCACG
TCGAGTGTGGGAGTCGTCCATGATATCATCGAGCACAAGAAAGAAGGCTTGAAGCCATTCAATGCACCAACCGAGAGTGGAGGCAAGAAACATCTCCTCC
TCAGTAAGAACATCGACGCCTTTCAACAGCTTATAGCTGTCGACCACAGAGAGCCCACGGTTGCACTTTCCTCCCAGTACATTGTAGTCCAGCATGCGGT
CGATCCACTGGCGCGACGACTCCGTGTACTCGAAGGCGGGGTCCCTGAGCAGCTCCGCCTTGAGCGCGTCGTAGATCCGCGCGAACGCCGCCTTGTTCTC
CCCGCCCCCGCCGTTCGCCGCCGCCGCCATTGCCTCCTCAAACAGGGGATGGCAGGGGAGGGAAGCCGAGGAGTAAATCGGCCGAGAGTGACCTCAGTAC
GGCCGCGCTGGGAGAGAGGAGGGGGGCGGATGGCGGGTGGCGGGTGGCGGCTGCGAGGGGCGCGGGGCGCGGAGCTATTTTAGGGGCGGGGCTGCGACGG
CGACGGGTGATGGGCGGAGGGGAGACTGNGGATCG
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