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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig5878  (registered. 2012)
Contig Information
Length 1495 bp
Clones alternative view 120 Clones [Download: TSV  ,  FASTA ]
Wh_e Seed DPA10 4
Wh_h Spike at heading date 7
Wh_oh Pistil at heading date 4
Wh_SH - 3
Wh_DPA20 Seed DPA20 2
Wh_EM Dormant seed with water absorption 3
Wh_V4816 Shoot grown under cold condition for 16days 6
Wh_V483 Shoot grown under cold condition for 3days 2
Wh_VABA Shoot with ABA treatment 2
Wh_VHS Shoot with heat shock treatment 6
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 6
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 2
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 1
WH_XN Leaves, plant was grown at constant 23Ž 9
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 2
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 1
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 5
WH_XR Roots, 18 day old plants were grown hydroponically 6
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_XT Roots, 18 day old plants were grown hydroponically 5
WH_SP 4
WH_XE Seedling, infected with leaf rust 9
WH_XF Seedling, infected with leaf rust 10
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 9
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 3
WH_XV Leaves, plant was grown at constant 23Ž 1
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 4
WH_XX Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115484337|ref|NP_001065830.1|| Os11g0163100 [Oryza sativa (japonica cultivar-group)]
Score 751
Evalue 0
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig5878 
AAAAAAAAACCCGGAACATGCGGCATATGATTCGGCACCGGTCAAATATAGCAGCCCACTTTACATATTACGAGTCTACAAGGTACACAATTTTGACCCA
ACAAATTAATCCGGCAATACAGTCAACAGAATCCCAGCAATCTTAAACATAGTAGCTTACATGGCAAGGACTTGAGAAAAGAACAGCCAGAATAGATTCA
GAAGACCCAGACAACTCGCAACTTAGAAGCACTTCCGGTGGACAATCGCTGGACCTGACTCATCATACTCGCCCTTCGAGATCCACATCTGTTGGAAGGT
ACTAAGGGAGGCAAGAATCGACCCTCCAATCCAGACACTGTACTTCCTCTCAGGCGGTGCCACCACCTTGATCTTCATGCTGCTTGGTGCAAGGGCAGTG
ATCTCCTTGCTCATACGGTCAGCAATACCCGGGAACATAGTTGAGCCACCACTGAGCACAATGTTACCATACAGATCCTTCCTGATATCCACATCACACT
TCATGATAGAGTTGTAGGTGGTCTCATGGATTCCAGCAGCTTCCATACCAATGAAAGATGGCTGGAAAAGGACCTCAGGGCAACGGAACCTCTCTGCCCC
AATGGTGATCACCTGCCCATCAGGCAGCTCATAGCTCTTCTCCACAGAGGAGCTGCTCTTGGCATTTTCCAGCTCTTGTTCATAGTCAAGAGCCACATAT
GCGAGCTTCTCCTTGATGTCCCTTACAATTTCCCGTTCGGCAGTGGTGGTGAAGGAGTAACCTCTCTCAGTAAGAATCTTCATCAAACAGTCAGTTAGGT
CGCGCCCAGCGAGGTCAAGACGAAGGATGGCATGTGGAAGGGCATATCCTTCATAGATTGGCACAGTATGGCTGACACCATCACCAGAATCCAACACGAT
ACCTGTTGTGCGTCCACTAGCATATAGGGAAAGCACAGCCTGGATGGCCACATACATGGCTGGAACATTGAAGGTCTCAAACATGATTTGTGTCATCTTC
TCCCTGTTAGCCTTGGGGTTCAGGGGCGCCTCAGTCAGCAGTACTGGGTGCTCCTCAGGTGCAACACGGAGCTCGTTGTAGAAAGTGTGATGCCAGATCT
TCTCCATGTCGTCCCAGTTGCTGACGATACCATGCTCGATCGGGTACTTCAAGGTGAGGATACCCCTCTTGGATTGGGCCTCGTCACCAACATATGCATC
TTTCTGCCCCATCCCCACCATCACACCAGTGTGGCGGGGGCGCCCAACGATACTTGGGAAGACGGCCCTGGGTGCATCATCCCCTGCAAAACCAGCCTTG
ACCATGCCAGTTCCATTGTCGCAGACAAGGGGCTGGATGTCCTCACCGTCAGCCATTTGATTGAGTGACTCCGGGGATCTAGGGGAACCTGCCCGCCTGA
GGACCTCCCACCGAGATGAGCGGCAGCTGCAGAGAGCGGAGGAAGAGGATGAGGGGGTGGGTGGCGGCGGTGGTGGCGAACCAGGCAGAGGCAGG
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