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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig5602  (registered. 2012)
Contig Information
Length 839 bp
Clones alternative view 162 Clones [Download: TSV  ,  FASTA ]
Wh_dL Crown of seedling 6
Wh_e Seed DPA10 6
Wh_f Spike at flowering date 5
Wh_h Spike at heading date 13
Wh_oh Pistil at heading date 1
Wh_r Root 6
Wh_yd Spikelet at late flowering 2
Wh_CSEC Callus 2
Wh_DPA20 Seed DPA20 2
Wh_EM Dormant seed with water absorption 2
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 7
Wh_KMP Shoot grown under continuous light 9
Wh_KMV Shoot grown with continuous light after cold treatment 2
Wh_MS Seed DPA5 of DT3DL CS wheat 1
Wh_OKCS Seed DPA5 2
Wh_PCDAM Anther at meiosis 6
Wh_RDr Root of dessiccated seed 3
Wh_SHC Shoot grown with cold treatment 7
Wh_SHDr Shoot grown with dessication 2
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 8
WH_XN Leaves, plant was grown at constant 23 2
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23 ) 2
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23 ) 3
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27 ) 6
WH_XR Roots, 18 day old plants were grown hydroponically 4
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_XT Roots, 18 day old plants were grown hydroponically 5
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 6
WH_SP 13
WH_XB Root 7
WH_XC Root, treated at 50 microM Al for 6h 2
WH_XD Root, treated at 50 microM Al for 6h 4
WH_XE Seedling, infected with leaf rust 2
WH_XF Seedling, infected with leaf rust 4
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 4
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23 ) 2
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27 ) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115454651|ref|NP_001050926.1|| Os03g0685500 [Oryza sativa (japonica cultivar-group)]
Score 225
Evalue 5.00E-57
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig5602
GATTACAGATGGCAAGCTCTCAAAACCACACAAGAAATGAAGTCGCTTTTTTTTTTATTTAAACTCCATATTTATAAACCTGGTGCCATGAAGGTAGATC
CAACATCAATACAAGGAAATACTCCCAAGACAACAGAGACCACAAACTAGGGTAGGTAATAGACATAAGCTGTGGCATAGGTTCATAATATTGCCAATGA
ATTATTTAGGAGATATATATCATCATCATCATGACTGAAAACAGGCTCCGACCAATTAAGCCCCAATCAAGCAAAGATAGTAGCTTAAAGAGTTGCACCA
GCTCCTGCTCCTCCACGGCGGCACTCGTTCAGCATGTCGAGGTAGAACTGGCACTTGCTGATGTCGCTGCCGTAGTGGTTGATGCAATCTTGGAAGGCCT
TGGAAGGGTTGCCACACTTGTCATCAGCAGCGTTGTCCATTGGAGTCATAGATGCAGCAGCCTCACCGACAACAGTCTCATGCTGAATGGTACGGGGACC
CATCACAGCATCAACAGCCCTGTGCGCCATAGCACTGCCAGTACCAAAAGCCATGCCCTGAGCAATAGTGGACCCAATTCCGCTCATGATACCACCACCG
CTGCTCTGGGTAGTAGCAGGTGGAGGAGCTTGACGGGCTGGCGCTGGTGGGTTTCTCACTGGAGCAGCACGTGGAGCAGGGCGGGAAGATCTTCCTCCTC
CGCTGCGGCGAGCCATGGCGGCGGGTGTGGCGGACGGCGGGAGGAAACCCTAGGCTGGAGGCGGCGGCGGGAGGGGGGAGCGGATGAACAGGAGGCCAAC
GGATCAGCCTCGTGCCGAATTCGGCACGAGGCCTCGTGC
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