Japanese | English  
Genome / Development
cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig5176  (registered. 2012)
Contig Information
Length 940 bp
Clones alternative view 210 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 13
Wh_dL Crown of seedling 6
Wh_f Spike at flowering date 2
Wh_h Spike at heading date 7
Wh_oh Pistil at heading date 2
Wh_r Root 7
Wh_yd Spikelet at late flowering 5
Wh_CSEC Callus 6
Wh_DPA20 Seed DPA20 6
Wh_EM Dormant seed with water absorption 6
Wh_EMI Dormant seed with water absorption after breaking 21
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 6
Wh_KMV Shoot grown with continuous light after cold treatment 4
Wh_MS Seed DPA5 of DT3DL CS wheat 10
Wh_OKCS Seed DPA5 4
Wh_PCDAM Anther at meiosis 4
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 5
Wh_SHDr Shoot grown with dessication 1
Wh_V4816 Shoot grown under cold condition for 16days 6
Wh_VHS Shoot with heat shock treatment 4
Wh_VSCB Liquid cultured tissue 1
Wh_VWD Shoot grown with dessication 2
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 4
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 5
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 2
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 3
WH_XR Roots, 18 day old plants were grown hydroponically 4
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 7
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 3
WH_SP 9
WH_XA Root 2
WH_XB Root 18
WH_XC Root, treated at 50 microM Al for 6h 6
WH_XD Root, treated at 50 microM Al for 6h 9
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 4
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115462241|ref|NP_001054720.1|| Os05g0160200 [Oryza sativa (japonica cultivar-group)]
Score 325
Evalue 6.00E-87
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig5176
TTTTTTTTTTCAACACATAACAAAACAGCAATAGCAAAATATTCATCCACATGTAAGACCTGCATAGCTATTGGCTAATCTAGAAACACCTGCAATAATG
GGTTATAAGCTGAAGAACCCATGCATCAACATGTCTCGTGATCGCACCACCTTATTAAGATCAACAAAGCATAGAATAAGATAGCCTTTTTTGAATGGAT
TAAAAGCATTTAGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCATAACAGCAGTAGGCGATGAAATATTCAGGAAACATGATACTCAAGG
ATTCAGTTTAAACGACAAACGGGACACATCTAAATGAGTTCGACTCTCGATAGGTAGGTAGGTAAAAGAGCAGAGCAAACGCAAGCCACCTCTAAGCCTT
CTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCGCCGCAGTCGGCGTTCGGGCACTCC
TTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTGGGCT
TGGTGTAGGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCG
GCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCA
GAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGGGAGGTCGCCTCCGCGCGCTGCGTCGGC
GACGGCGGCGGCGGGGTAGGGTTTGGGTTGGGGGGCGGAG
page-top