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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig5005  (registered. 2012)
Contig Information
Length 1133 bp
Clones alternative view 144 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 1
Wh_f Spike at flowering date 4
Wh_oh Pistil at heading date 7
Wh_r Root 3
Wh_yd Spikelet at late flowering 3
Wh_CSEC Callus 2
Wh_DPA20 Seed DPA20 2
Wh_EM Dormant seed with water absorption 5
Wh_EMI Dormant seed with water absorption after breaking 1
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 7
Wh_MS Seed DPA5 of DT3DL CS wheat 4
Wh_PCDAM Anther at meiosis 2
Wh_RDr Root of dessiccated seed 3
Wh_SHDr Shoot grown with dessication 2
Wh_VABA Shoot with ABA treatment 2
Wh_VWD Shoot grown with dessication 6
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22 16L-8D) 3
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22 16L-8D) 4
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 2
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 5
WH_XN Leaves, plant was grown at constant 23 4
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23 ) 3
WH_XR Roots, 18 day old plants were grown hydroponically 6
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 5
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 4
WH_SP 4
WH_XA Root 13
WH_XB Root 7
WH_XC Root, treated at 50 microM Al for 6h 2
WH_XD Root, treated at 50 microM Al for 6h 4
WH_XF Seedling, infected with leaf rust 5
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 4
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 6
WH_XV Leaves, plant was grown at constant 23 2
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27 ) 3
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|222625756|gb|EEE59888.1|| hypothetical protein OsJ_12490 [Oryza sativa Japonica Group]
Score 366
Evalue 3.00E-99
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig5005
GAAAAAGAACTACAGTACAACTTTCACTTACCTTGCATGACATATCAAAGCTAATGTAGCGACACATTTAACCGAATGACAGTCAACAACAAGGGGTAAA
AAACATTAGCACGGCGAAACTCAAGTATCCTTTCCAGGACACTCCCAAGCTTTATTCTGCGTCTATCACCATCAGCTGAGATGGATGGTCTATACGCTCC
AGAAACAAGTGCGTGGCGGCGCGCGCGGCCACGGAAATATACACTAAATAAGCAGGAAAACATCACACACCCAAATTCAAGTTCAACGGCCATTGTCCGC
GAAGAAACACGGCCTATTTCGTCATCATCACCCTGGTCGTTATTCGAGTTCATTCAAAGGGACGCCCTGCAAAACGGCGGGGTCCTAGTACCCACCCTGG
ATGTAGGCGTTGAGCCGGTTCAGCTCCTCCTTGTGCTCGCTGACCACCGCGCGCACCACGTCGCCGATGGAGACCATCCCCATCATCTCGGTGCCGCTTA
TCACCGGGATGTGCCTGATACGCTTGTCTGTCATCAGCTGCATTGCTTTCAGGACTCTGGTTTCAGGTTTCACCGTGATCAGCTTGTTCTCTTCGGTCAT
GATATCTCCAACTTTGGTTGACTTGGAGGATCGACCCTGCACTATGATTTTCCGGAGATAATCTCTCTCTGTGACGATGCCCGCAATTGATTTATCTTCC
CCAGGTTTAACAACCACCAAAGCTCCCACATTGTGCTGTGTCATCGATTTGACAGCATCATAGACACTGTCATCAGTGGTGCACCAGAGCCATGATCCAT
CAGCACTCTTCCCTTTGGACTTCAAAATATCTGCAACGGTGCTGCTCTCAAATCCACTCTCCTCTATTTGAGCAGGTGATACTGACATGAAGCGCGGGAA
CACAGCAGGCAGCATAGCAGGCTTCACAACACTGATGTGTTGCAGGACAGCAGATTTGAGCACACTGCCATGTGATCCGATAGCTTGAATTGCTCGCTGC
ATTTTGTTCTGCGTGGCCGCGGGACTGAGCTTCGGTTCTGGGAGGAGCAGCGAGTTGCGGGGAGGAAGAAGATGGGGGAGGGACACTTGTGATGCTGGGA
GGCAATGGTGGGGGGTGACGAGCGCTAATTAAA
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