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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig4726  (registered. 2012)
Contig Information
Length 1149 bp
Clones alternative view 370 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 23
Wh_dL Crown of seedling 17
Wh_e Seed DPA10 5
Wh_f Spike at flowering date 1
Wh_h Spike at heading date 8
Wh_oh Pistil at heading date 4
Wh_r Root 6
Wh_yd Spikelet at late flowering 18
Wh_CSEC Callus 13
Wh_DPA20 Seed DPA20 9
Wh_EM Dormant seed with water absorption 16
Wh_EMI Dormant seed with water absorption after breaking 16
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 4
Wh_KMP Shoot grown under continuous light 2
Wh_KMV Shoot grown with continuous light after cold treatment 3
Wh_MS Seed DPA5 of DT3DL CS wheat 12
Wh_OKCS Seed DPA5 10
Wh_PCDAM Anther at meiosis 9
Wh_RDr Root of dessiccated seed 8
Wh_SHC Shoot grown with cold treatment 15
Wh_SHDr Shoot grown with dessication 4
Wh_V483 Shoot grown under cold condition for 3days 8
Wh_VHS Shoot with heat shock treatment 2
Wh_VSCB Liquid cultured tissue 23
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 2
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 2
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 3
WH_XN Leaves, plant was grown at constant 23Ž 8
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 8
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 5
WH_XR Roots, 18 day old plants were grown hydroponically 6
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_XT Roots, 18 day old plants were grown hydroponically 2
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 3
WH_SP 8
WH_XA Root 19
WH_XB Root 24
WH_XC Root, treated at 50 microM Al for 6h 23
WH_XD Root, treated at 50 microM Al for 6h 4
WH_XF Seedling, infected with leaf rust 2
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 13
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|119638443|gb|ABL85034.1|| ribosomal subunit 8E protein [Brachypodium sylvaticum]
Score 408
Evalue 7.00E-112
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig4726 
ATTGCTTTGCATACATGATCGGGTTTTCACACTGGATGGGTCCTTTGCAACTGCAGGAACCATACAAATCTAACATGCCTGAAAGGCAAAGCTGGCAGCA
AATCAATTTTTTGACTCAAGATCAAAACTTCACTGAACAGATGAAAATACTGCAAGGTAGAACACATAATAGAATCTGGATAGCTTTAGATCACAACCAA
AACAGGCAAAACATTCTCAGTTCAACCTAGGACTCGAACCGTTTACAGAAAATGGTGTTCAGTATGTCTGCAAACATGACATGGACGCAACATCTAAGAA
AATCCAACGAGTAACATGCAGCAGCTCTTCAGCCTAAGCTGTGGCACCCTTGCCCTTCTTCTTCTGGAGCTTCCTCATGTAGAACTCCAGCTCCTTGCCC
TCCAGGATGTACCCATCAGCTCTGCCACACTGTCCAGGGCGAGACGAAATGCAGGCCAGCAGCCTTCCACCACTGAACTGCTCCTCAATGTGCGAGTCCA
GTGTACGTCCCTGCTGGCGCTTCTCAAGCTTCCTCTGGACATTGTTGCTCTTCTTTGCTTCCTCTGTGGCAGCAGCAGCAACCTCAGCCTCTTGCCCCTC
AGCAGGTTCCTTCTTGGCAGCTGCAGCAGCTTTCTTCTTCCTACCGATTTCGACTCCATAATGAGTCAGGTACCACTGCTTGAAGGGGGCAGCATCAACT
TGCACAATGGCATTCTTGACAAGGGTCTGAGTCCTCACAAGCTCATTGTTTGACGAATTGTAAACCACATCCAGGAGACGGGTCTTGCGGGTCACAGCCT
CACTACCCCATGAGAAGTTACCAGTGTCAAGACGGAGAGCCCTCCACTTCACGTTACCTCCGCGAACACGGACCCTCCTCACTGTCTTGTTGCTTGAAAG
CTTAGTGTTGGCTGGCTGGCGGCCGAGCTCATACTTTCGCTTCTTCCTCCAAGCCTTCTGCTTCCCACCGGTGGCCCGGCGCTTGTGCATGGAGTCACGC
GAGATACCCATGGTGGCGTCGGCGGCTTGGTTCCGCTGCTGATTCGCCTCCTATGCGCGCGCCGCCGCAGGGTAGGGCTTTTTTTTCTTCAAAATCTGAG
TATTTGACTTGTAACCTAACTATGTGGATCGAGGGAACTGCAGACCATT
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