Japanese | English  
Genome / Development
cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig28346  (registered. 2012)
Contig Information
Length 1061 bp
Clones alternative view 83 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 5
Wh_dL Crown of seedling 3
Wh_f Spike at flowering date 1
Wh_h Spike at heading date 3
Wh_oh Pistil at heading date 1
Wh_r Root 4
Wh_yd Spikelet at late flowering 1
Wh_CSEC Callus 4
Wh_EM Dormant seed with water absorption 4
Wh_EMI Dormant seed with water absorption after breaking 2
Wh_KMP Shoot grown under continuous light 2
Wh_KMV Shoot grown with continuous light after cold treatment 1
Wh_OKCS Seed DPA5 1
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 4
Wh_VHS Shoot with heat shock treatment 3
Wh_VSCB Liquid cultured tissue 3
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 1
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 2
WH_XN Leaves, plant was grown at constant 23℃ 1
WH_XT Roots, 18 day old plants were grown hydroponically 6
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 1
WH_SP 5
WH_XA Root 4
WH_XB Root 5
WH_XC Root, treated at 50 microM Al for 6h 5
WH_XD Root, treated at 50 microM Al for 6h 8
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115445597|ref|NP_001046578.1|| Os02g0287000 [Oryza sativa (japonica cultivar-group)]
Score 470
Evalue 1.00E-130
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig28346
ATAAAAACACAGGACAGGAATAAACTAAATATTTAGTTTTCAACTCATAACCTCCATCCAGAAAGTAACACGAACAAAATAAGATAGCGGAACACTGGCT
AGGAATGTCGACAGAAGTACTCAAGAAATCAGCCATCAAAACTGACTACAAAGTTCACGACACCCAGGTGGCACATATATCATCTTCTAGATATGAAGCA
GCAAAATAGCAACTTCTATCCTCTACTCAGCAGCAGCAACCTCCTCTGCTCCAGGAATCACCTCATCTCCATCAGCAGGCCTGTCAAGCTTCACACCAAC
ATCCTCCTTGTAGTCACCGTGAACCTCCATGAGCTTCCCCAGGTCGAACTTGGGGGCCTTCAGGATCTTCACCTTGCGGACGTACACGTTCTGGAGGGGG
AAGATGCCTGAGGTGGCCTTCTCAATCTCCTTTCCAATCACCTCAGGGATGAACTTGTTCACAAGCTCCTTTAAGTCACAGCTTGCAGCTTGGTTGACCA
TGATCTCAACCATCTTGCGGCGGATCTGTCTGATCTGACTTGCTTGGGCATAGCAAGTGCGCTTCACCTGGTTTGGGCGTCTCTTGGTGAAGCCAATGGC
GAACATGCGGAGCATGTAGTTGTCAGTGGTCTTCACATCCACATGAGCCTCAATGAGTGTCTGCCACTTCCTCACAAGAGACCTGAGCTTGTCAGTGGTG
AAGTCCATGCCCCAGAAGTTTGTGAGGACATTCATCCCTTGCACATCCTCAGCACGGAGTCTGATCTTCCTGTAGGCCTGGTCCTCATCGTTCTGAAGAT
CAGCTAGAGATACTTCGAACACCCTGTGCTTCAGACCCTCTGAGGCAATCTTGGTACCCTGCGTCCTGGACACGAGGGTCTTGCCGACGTTGCGGCTGGT
GAACAGCAGCGGCGCCTTGATGTCATACCACTGCTTCTTGGTGAACGGATCGACGGCCTTCTTCTTGCTTCCCTTCCTCCCCTTGGAGATGCGCTTGTTC
TTGCCGACCGCCATGGTTGCCGCTGCGGGTGGAGTGGCGGCGCTGCGGCGTCTGGGGGCTG
page-top