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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig2419  (registered. 2012)
Contig Information
Length 2241 bp
Clones alternative view 215 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 1
Wh_dL Crown of seedling 4
Wh_h Spike at heading date 1
Wh_r Root 4
Wh_yd Spikelet at late flowering 8
Wh_CSEC Callus 5
Wh_DPA20 Seed DPA20 1
Wh_EM Dormant seed with water absorption 2
Wh_EMI Dormant seed with water absorption after breaking 14
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 1
Wh_KMP Shoot grown under continuous light 2
Wh_KMV Shoot grown with continuous light after cold treatment 6
Wh_MS Seed DPA5 of DT3DL CS wheat 2
Wh_OKCS Seed DPA5 1
Wh_RDr Root of dessiccated seed 7
Wh_SHC Shoot grown with cold treatment 5
Wh_SHDr Shoot grown with dessication 2
Wh_V4816 Shoot grown under cold condition for 16days 5
Wh_V483 Shoot grown under cold condition for 3days 7
Wh_VHS Shoot with heat shock treatment 1
Wh_VSCB Liquid cultured tissue 9
Wh_VWD Shoot grown with dessication 1
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 1
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 4
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 3
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 4
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 4
WH_XN Leaves, plant was grown at constant 23Ž 4
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 3
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 2
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 5
WH_XT Roots, 18 day old plants were grown hydroponically 5
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_SP 18
WH_XA Root 15
WH_XB Root 6
WH_XC Root, treated at 50 microM Al for 6h 13
WH_XD Root, treated at 50 microM Al for 6h 6
WH_XE Seedling, infected with leaf rust 13
WH_XF Seedling, infected with leaf rust 7
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 2
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 3
WH_XV Leaves, plant was grown at constant 23Ž 3
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115456247|ref|NP_001051724.1|| Os03g0821100 [Oryza sativa (japonica cultivar-group)]
Score 1240
Evalue 0
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig2419
GGCCGCCGCCAGCAGCTGCGCAAAGGCTCCTCAAACCCTAACCCTAGTCCTAGCTTAGCTTCCTTCTTCTCGATCTAGCTAGAGCCATGGCGCCGACCAA
GGGCGAGGGGCCGGCCATCGGCATCGACCTCGGCACCACCTACTCGTGCGTCGGCGTGTGGCAGCACGACCGCGTCGAGATCATCGCCAACGACCAGGGC
AACCGCACCACGCCCTCGTACGTCGCCTTCACCGACTCGGAGCGTCTCATCGGCGATGCCGCCAAGAACCAGGTCGCCATGAACCCCATCAACACCGTCT
TCGATGCGAAGCGTCTTATCGGCAGAAGGTTTGCTGATGCCCCTGTCCAGAGTGACATTAAGATGTGGCCGTACAAGGTTATTCCTGGCCCTGCAGACAA
GCCTATGATTGTAGTGCAGTACAAGGGTGAGGACAAGCAGTTTTCAGCTGAAGAAATTTCTTCCATGGTCCTCATCAAGATGCGTGAGATCGCTGAGGCT
TACCTAGGAGTAACTATTAAGAATGCCGTTGTCACTGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACCAAGGATGCTGGTGTTATTGCTGGTC
TTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAATTGCCTATGGTCTTGACAAGAAGGCTACCAGTGTCGGTGAGAAGAACGTGCTTATCTT
TGACCTCGGTGGTGGCACTTTTGATGTCTCTCTCCTTACCATTGAGGAGGGTATTTTTGAGGTCAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAG
GACTTTGACAACCGTATGGTGAACCACTTTGTCCAAGAGTTCAAGAGGAAGCACAAGAAGGATATCAGTGGAAACCCCAGGTCTTTGAGGAGGCTCAGGA
CTTCATGTGAGAGGGCGAAGAGGACCCTTTCTTCCACTGCCCAAACCACCATCGAGATTGATTCACTCTTCGAGGGAGTTGATTTCTATTCCACCATCAC
CAGGGCCAGGTTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGCATGGAGCCAGTGGAGAAGTGCCTGAGGGATGCCAAGATGGACAAGAGCACCATC
CATGATGTCGTGCTTGTTGGTGGTTCCACCAGAATCCCCAGAGTTCAGCAGCTGTTGCAGGACTTCTTCAACGGGAAGGAGCTCTGCAAGAGCATCAACC
CTGATGAAGCCGTTGCCTACGGTGCTGCCGTCCAGGCTGCAATCCTCAGTGGTGAGGGGAACGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTCACCCC
ACTGTCTCTTGGTCTTGAGACTGCTGGAGGAGTCATGACTGTGCTCATCACCCGGAACACCACCATCCCCACCAAGAAGGAGCAGGTCTTCTCCACCTAC
TCCGACAACCAGCCTGGTGTGCTCATCCAGGTTTTTGAGGGTGAGAGGACAAGGACCAGGGACAACAACCTGCTTGGCAAGTTTGAGCTCTCCGGCATCC
CGCCTGCACCCAGGGGTGTTCCCCAGATCACTGTCTGCTTCGACATTGATGCCAACGGTATCCTGAATGTCTCTGCCGAGGACAAGACCACTGGCCAGAA
GAACAAGATCACTATCACCAACGACAAGGGCAGGCTGAGCAAGGACGACATTGAGAAGATGGTCCAGGATGCAGAGAAGTACAAGTCTGAGGATGAGGAG
CACAAGAAGAAGGTTGATGCCAAGAACTCCCTGGAGAACTACGCCTACAACATGAGGAACACCATCCAGGACGAGAAGATTGCCTCCAAGCTGCCTGCTG
ACGACAAGAAGAAGATTGAGGATGCTGTCGACGCCGCGATCCAGTGGCTTGACGCCAACCAGCTTGGTGAGGTTGACGAGTTTGAGGACAAGATGAAGGA
GCTGGAGGGCCTCTGCAACCCCATCATCGCCAAGATGTACCAGGGTGCCGGTGCTGACATGCCCGGAGGCATGGACGAGGACGCGCCGGCTGCCAGCGGC
GGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGTTATTCTCTTTGATATAGTGAGAAAATACACTATACGCCATTTGTTTCAGTCCTGGGTGCCAATCA
TATCACCTGGGCTGGAAGTTTTGTTGTACTTTTGGTCTGTAGCATCACGAGACTTGTGTGTACCGTAAACAATGCAATGATGCATGTTTTGGCTCATTGT
TGATTTCAGCTTAATGCTTATTGTTTGGACTAAAAAAAAAA
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