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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig1509  (registered. 2012)
Contig Information
Length 1057 bp
Clones alternative view 79 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 3
Wh_dL Crown of seedling 1
Wh_f Spike at flowering date 2
Wh_h Spike at heading date 1
Wh_r Root 5
Wh_yd Spikelet at late flowering 6
Wh_DPA20 Seed DPA20 6
Wh_EM Dormant seed with water absorption 2
Wh_EMI Dormant seed with water absorption after breaking 4
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 1
Wh_KMP Shoot grown under continuous light 1
Wh_MS Seed DPA5 of DT3DL CS wheat 4
Wh_OKCS Seed DPA5 2
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 4
Wh_SHDr Shoot grown with dessication 1
Wh_V483 Shoot grown under cold condition for 3days 1
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 2
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 2
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 1
WH_XN Leaves, plant was grown at constant 23Ž 6
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 3
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 1
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 1
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_CA 2
WH_SP 2
WH_XA Root 1
WH_XC Root, treated at 50 microM Al for 6h 2
WH_XD Root, treated at 50 microM Al for 6h 1
WH_XE Seedling, infected with leaf rust 1
WH_XV Leaves, plant was grown at constant 23Ž 2
WH_XX Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115452901|ref|NP_001050051.1|| Os03g0337800 [Oryza sativa (japonica cultivar-group)]
Score 395
Evalue 6.00E-108
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig1509
TGGTTTAACAAACTCTGCATAAGCATCTCTGATTGAAACATCCAACAGAACAAACACGATATGATATTTAAGGTATCTGACACGCTGACACAAACAAGAT
ATTGCACAGAAAACAGTTCTGAACTTCTGATGTTCCAAAATTAGGCTAACCCTTGATATTACCAGAAAGATAAAGCTTCTTATCAGACCTTCACTTCTTG
GCCTTCTTAGGTGCAGCTGCTGCCTGAGCGGGAGCTGCAGCCGCTGGTGCTGGTGCATGATCTCTCGGGCCCTGAGCCAATCTCTCCTCCCTCCTGGCAA
TCTTCCTCTCCCTGCTTGCCTTGCTCTTGGCGCGCTTGGCCTCAAACTGGTCAGAGAGGGTCTTCTCTCTTGCCTTCTCAGCCTTGGACTTGTGGATACT
CTCCATGAGGACCCTCTTGTTCTTGAACATGTTACCCTTGACCTTCAGGTACATGTCATGGTACATGTGCTTGTCGATCTTCTTGGCCTCACGGTACTTG
CGCAGAAGGCGCCTCAGGACACGCATCCTCCGCATCCACAGGATCTTGGTGGGGAGCCTAGCCTCCCTGGTACCCCTACGCTTACCATATCCAGAGTGAC
GGCCCTTCTGCTTGGCCTCATGTGCCCTCCTTGCACGAGACCTGGAGTGGATCTTCTGAGGCTTCCTGATGATGAAACCATCCTTCACCAGCTTCCGGAT
ATTCTGCCGGGAGTTGGCCATGGAGATCTCGTTGACCTCATTGGGGTCGAGCCAGACCTTGCCCTTGCCGCACTTGAGGACGCTCGAGGCCAGGCGCTTC
TGCAGCTTCAGCGACACCATCTTCGCCGCCGCTCTCCTCCTCCCGTCTGCCTCGTGCCGAATTCGGCACGAGGAATCGATTATGCTTAGACAAATATATA
ACTGAACTGCAAATTTAGCACTAAACCCACTGCAACGTTGCAACATCATCAGAGCATGATTTTGCAATTCCCAGTCCGTTATTGCACCACCAGAGCATTT
CTATCCTATTCCCACTCCACTGTCGCCGGTGGCTTTGATGTTACGTCCAGGACAACA
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