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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig24980  (registered. 2007)
Contig Information
Length 903 bp
Clones 50 Clones [Download: TSV  ,  FASTA ]
Wh_CSEC Callus 9
Wh_EM Dormant seed with water absorption 2
Wh_EMC Dormant seed with cold treatment after water absorption 7
Wh_EMI Dormant seed with water absorption after breaking 9
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 4
Wh_MS Seed DPA5 of DT3DL CS wheat 6
Wh_OKCS Seed DPA5 8
Wh_PCDAM Anther at meiosis 1
Wh_V4816 Shoot grown under cold condition for 16days 2
Wh_VSCB Liquid cultured tissue 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os06g0115500 [Oryza sativa (japonica cultivar-group)] >gi|7248415|dbj|BAA92738.1| putative 60S ribosomal protein L13E [Oryza sativa Japonica Group] >gi|24413953|dbj|BAC22205.1| putative 60S ribosomal protein L13E [Oryza sativa Japonica Group] >gi|113594653|dbj|BAF18527.1| Os06g0115500 [Oryza sativa (japonica cultivar-group)] >gi|125553806|gb|EAY99411.1| hypothetical protein OsI_21382 [Oryza sativa Indica Group] >gi|125595832|gb|EAZ35612.1| hypothetical protein OsJ_019095 [Oryza sativa (japonica cultivar-group)] >gi|149391053|gb|ABR25544.1| 60S ribosomal protein l13-2 [Oryza sativa (indica cultivar-group)] >gi|215678596|dbj|BAG92251.1| unnamed protein product [Oryza sativa Japonica Group]
Score 866
Evalue 4.67032e-91
Total Hit Count 304
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig24980
CATCCTCTTCGTCCTCCCGTCCGCCGCAGTGCAGGTAAGAAGGGGTCGAAATGGTGAAGCACAACAATGTTATCCCTAACGGCCACTTCAAGAAGCATTG
GCAGAACTATGTCAAGACCTGGTTCAACCAGCCTGCCCGCAAGCAGAGGCGCCGCATTGCTCGTCAAAAGAAGGCTGTGAAGATCTTCCCTCGCCCAACA
TCTGGTCCTCTTCGTCCCATCGTGCAATGCCAGACTCGGAAGTACAACATGAAGGCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGTCAGCGG
GCATCCCGAAGAAGCTAGCTCCTACCATTGGCATTTCTGTGGACCACCGCCGTAAAAACCGGTCACTTGAGGGTATGCAGTCTAACATTCAGAGACTCAA
GACTTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTTAAGGCTGGTGATTCTACCCCTGAGGAACTTGCCACAGCCACCCAGGTCCAG
GGTGACTACATGCCTATTACTCGTGGTGAGAAGCGCTCGGTTGAGCTCATGAAGGTCACCGAAGAGATGAAGGCGTTCAAGGCCTACGGCAAGCTACGTG
TCGAGAGGATGAACCAGCGCCAGCTTGGCGCCCGCACGAAGAAAGCCGCCGAGGCAGAGAAGGAAGAAAAGAAGTGATAAGATATGTTGTTTCATTCTGC
AGCTAGTGAATGTTATCATCGGGAACTTCTTCTAAATTTTGTTTTGGGGCTGGAAATAGAGACCAGCCGATGGCTTTGATACCTGGTACTTGTTTGCATG
ATATGCTGTTCAGTGTTACCCTTGTTGGCATAATTCGTGGAGGTCAACCAGTATTATTCTCTGATTTATACCCAAAAATGCACTGGTCAAACTAAAAAAA
AAA
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