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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig24179  (registered. 2007)
Contig Information
Length 687 bp
Clones 25 Clones [Download: TSV  ,  FASTA ]
Wh_DPA20 Seed DPA20 2
Wh_EMI Dormant seed with water absorption after breaking 7
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 2
Wh_KMV Shoot grown with continuous light after cold treatment 2
Wh_SHC Shoot grown with cold treatment 1
Wh_SHDr Shoot grown with dessication 2
Wh_V483 Shoot grown under cold condition for 3days 2
Wh_VSCB Liquid cultured tissue 7
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0918300 [Oryza sativa (japonica cultivar-group)] >gi|2501449|sp|P55857|SMT3_ORYSJ RecName: Full=Ubiquitin-like protein SMT3 >gi|1668773|emb|CAA67922.1| ubiquitin-like protein [Oryza sativa] >gi|18146762|dbj|BAB82439.1| ubiquitin-related protein [Oryza sativa Japonica Group] >gi|19386713|dbj|BAB86095.1| putative SUMO protein [Oryza sativa Japonica Group] >gi|57900450|dbj|BAD87743.1| putative SUMO protein [Oryza sativa Japonica Group] >gi|113534738|dbj|BAF07121.1| Os01g0918300 [Oryza sativa (japonica cultivar-group)] >gi|125528873|gb|EAY76987.1| hypothetical protein OsI_04943 [Oryza sativa Indica Group] >gi|125573116|gb|EAZ14631.1| hypothetical protein OsJ_004456 [Oryza sativa (japonica cultivar-group)] >gi|149390685|gb|ABR25360.1| ubiquitin-like protein smt3 [Oryza sativa (indica cultivar-group)] >gi|215765122|dbj|BAG86819.1| unnamed protein product [Oryza sativa Japonica Group]
Score 468
Evalue 3.97546e-45
Total Hit Count 450
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig24179
GGAAAACCTCAGCCGCGATCGCCGGACCTTCCTCGTTCGTTCCCGGCGACGCTGCTGCAGATCAGTCCTACGCCGCGCGAGGGGCCGAGGAGATGTCGAC
GCCGGGCGGGGAGGAGGACAAGAAGCCGGCGAGCGCGGGCGGCGAAGGCGGCGGCGCCCACATCAACCTCAAGGTCAAGGGCCAGGATGGCAATGAGGTG
TTCTTTCGCATCAAGAGATCTACCCAGCTGAAGAAGCTGATGAATGCCTACTGCGACCGCCAGTCTGTGGATATGAAAGCTATCGCGTTCCTGTTTGACG
GTCGCAGGCTCCGTGCCGAGCAGACCCCAGATGAGCTTGAGATGGAAGATGGCGACGAGATCGACGCCATGCTCCACCAGACTGGAGGCTGCCGTCTCCC
TCCAAGCGCCTAGAAGAAGCCGTCGAAAGTCCTGCTCGTTGTCGGTCTACAAGACTCTGATCCATCATTAGAGAGCACATGAACGAATGAAAGTCTAAAA
AGAACTTGTGAGGCTCTGGCCCCATGCCATAGCTGAAGGACATTAGGGGGGCTTTTGTTTAGTGCCGTTTGGGTACTTTGGCCTGTCATGACTCGTTTAT
CCATCCCTTAATATATCCACCTATCCAGTACTGTCTTTTTAGTACTCCCAATGATTTGTGATTGTTTTAGTTCCTCGAAAAAAAAAA
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