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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig21651  (registered. 2007)
Contig Information
Length 872 bp
Clones 10 Clones [Download: TSV  ,  FASTA ]
Wh_KMP Shoot grown under continuous light 2
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 2
Wh_SHDr Shoot grown with dessication 2
Wh_VHS Shoot with heat shock treatment 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0358100 [Oryza sativa (japonica cultivar-group)] >gi|11544696|emb|CAC17628.1| putative phospholipid hydroperoxide glutathione peroxidase [Oryza sativa (japonica cultivar-group)] >gi|108708259|gb|ABF96054.1| glutathione peroxidase, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113548616|dbj|BAF12059.1| Os03g0358100 [Oryza sativa (japonica cultivar-group)] >gi|125543925|gb|EAY90064.1| hypothetical protein OsI_11636 [Oryza sativa Indica Group] >gi|125586318|gb|EAZ26982.1| hypothetical protein OsJ_010465 [Oryza sativa (japonica cultivar-group)]
Score 818
Evalue 1.6154e-85
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig21651
AAGAAACACGATAAAATTCGACAGAGGATTCGGGAGGACTTCCGCCGTCCGGGAGGCGAAGAGAGGGCGAGATGGGGGCGTCCGAATCTGTGCTGGAGAC
CTCCGTACACGAATTCACCGTTAAGGATTGCAACGGCAAGGAGGTGTGCCTGGACACGTACAAGGGGAAGGTCCTCCTCATCGTCAACGTCGCCTCCAAA
TGCGGGTTCACGGAGACTAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGAGAAAGACTTTGAGATATTAGCATTCCCCTGCAACCAGTTCT
TGCGACAAGAGCCAGGCAGTGACCAGCAGATCCAAGACTTTGCATGCACAAGATTCAAAGCTGAATATCCAGTTTTTCAGAAGGTGCGTGTAAATGGCCC
AGATGCTGCGCCGCTTTACAAGTTTCTGAAAGCTAACAAACCTGGTTTGTTTGGTTCAAGAATCAAGTGGAACTTTACCAAGTTTCTTGTTGACAAGAAT
GGAAAAGTAATCAACAGATACGCAACTGCTACCACACCATTTTCATTCGAGAAAGACATCCAGAAGGCACTTGAGGAGGAACCCTCTGACTCGCAGACAA
AAAAAGAGGAGGAATCCTCCGACTCGCAGAAGTAGGCACTTGCAAAGTATCCCCGTTGTAATATCTAGACCAATCTCTGCCAGTAAATTAATGTGATATT
TCCCCTGGTTTGATCTTTGTTCTTGTATTTGTGACTTCCGCTTATGCAACTAGAGGTTGTGTAGGTACCAATTATTTATCTGCACCTCTCGTGGTTCTCT
TTTGGGTGCTTTTGTGATGAACTGGAATTGTATGCAGTTTATGGTAGTTCTGTATTTGGACTANNAAAAAAA
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