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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig11275  (registered. 2012)
Contig Information
Length 1093 bp
Clones alternative view 485 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 15
Wh_dL Crown of seedling 10
Wh_e Seed DPA10 2
Wh_f Spike at flowering date 9
Wh_h Spike at heading date 9
Wh_oh Pistil at heading date 11
Wh_r Root 2
Wh_yd Spikelet at late flowering 16
Wh_SH - 3
Wh_CSEC Callus 6
Wh_DPA20 Seed DPA20 6
Wh_EM Dormant seed with water absorption 4
Wh_EMI Dormant seed with water absorption after breaking 11
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 4
Wh_KMP Shoot grown under continuous light 8
Wh_KMV Shoot grown with continuous light after cold treatment 14
Wh_MS Seed DPA5 of DT3DL CS wheat 12
Wh_OKCS Seed DPA5 14
Wh_PCDAM Anther at meiosis 2
Wh_RDr Root of dessiccated seed 10
Wh_SHC Shoot grown with cold treatment 5
Wh_SHDr Shoot grown with dessication 20
Wh_V4816 Shoot grown under cold condition for 16days 11
Wh_V483 Shoot grown under cold condition for 3days 9
Wh_VABA Shoot with ABA treatment 10
Wh_VHS Shoot with heat shock treatment 3
Wh_VSCB Liquid cultured tissue 6
Wh_VWD Shoot grown with dessication 12
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 5
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 5
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 11
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 16
WH_XN Leaves, plant was grown at constant 23Ž 21
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 4
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 12
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 7
WH_XR Roots, 18 day old plants were grown hydroponically 22
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 12
WH_XT Roots, 18 day old plants were grown hydroponically 10
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 10
WH_SP 19
WH_XA Root 2
WH_XB Root 9
WH_XC Root, treated at 50 microM Al for 6h 3
WH_XD Root, treated at 50 microM Al for 6h 6
WH_XE Seedling, infected with leaf rust 4
WH_XF Seedling, infected with leaf rust 6
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 18
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 20
WH_XV Leaves, plant was grown at constant 23Ž 2
WH_XX Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 8
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 9
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|13925734|gb|AAK49427.1|AF262983_1|AF262983_1 cyclophilin A-2 [Triticum aestivum]
Score 360
Evalue 2.00E-97
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig11275
GCATTCTTGATGTCGAGTCCAAAGGATCGACAGCAGGGTAAATGCCCAGCTCAGAAATCTGTCGTGACAACACAGTAGTAGCGTCAAGATGGGCGAAGGT
GGTAGCAGGGGCAGGATCTGTCAAATCATCAGCAGGCACATAAATAGCCTGGACAGATGTAATAGAACCCTTCTTTGTCGTCGTAATCCGCTCTTGCAGT
CCTCCAAGCCTCGTGCCGAATTCGGCACGAGGCCACTCCAATCCAATCCCCACAGAAATCCCCATCTCAAAACCCTAGCCCGTCCGATCCCGGCGAGATG
GCCAACCCGAGGGTGTTCTTCGACATGACCGTCGGCGGCGCGCCGGCCGGGCGCATCGTGATGGAGCTGTACAAGGACGCGGTGCCGCGGACGGTGGAGA
ACTTCCGCGCGCTCTGCACCGGCGAGAAGGGCGTCGGCAAGAGCGGCAAGCCACTGCACTACAAGGGCAGCTCGTTCCACCGCGTGATCCCCGACTTCAT
GTGCCAGGGCGGCGACTTCACCAAGGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGAGAAGTTCGCCGACGAGAAGTTCGTCCACAAGCACACCAAG
CCCGGGATCCTCTCCATGGCCAACGCGGGCCCCAACACCAACGGCTCCCAGTTCTTCATCTGCACCGTCCCCTGCAATTGGCTCGACGGCAAGCACGTGG
TCTTCGGCGAGGTCGTCGAGGGCATGGACGTCGTCAAGAACATCGAGAAGGTGGGCTCCCGCAGCGGCACCTGCTCCAAGCAAGTCGTCATCGCCGACTG
CGGCCAGCTCTAGATCCGTCCGCCCGCCGGTCGCCTGTCGTCGTCGCCCCGTGTCCCGTGTCGTCGATCTAAATAAGAGAGTCGTGTGTCGTGTCGTGTC
TTCCCCTTGTCCGTCCGATGAGATCTCCGTGGTTGGTTTAGGAGGGTTTTAGGTGGACTCTTTTGGCCGCTGGATCTGTGTCCGGCGGCCATGGTTATCT
TCCTGTGTCTGCTGCTATCTTACTGTTTGAATGAGATGAACTCCGCTATGAATTATCCATAATAAAAACTCGTTGGCTTCAAAAAAAAAAAAA
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