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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

whfl_all.Contig2253
Contig Information
Length 890 bp
Tissue Spikelet (at early flowering) full length cDNA
Clones 93 Clones [Download: CSV  ,  FASTA ]
rwhfl2l07    rwhfl5j21    rwhfl48c06    rwhfl24c14    rwhfl48e24    rwhfl34m15    rwhfl16h20    rwhfl34m16    rwhfl45p09    rwhfl19a08    rwhfl46b08    rwhfl54g17    rwhfl20l12    rwhfl26p12    rwhfl49b21    rwhfl16a08    rwhfl50p16    rwhfl30a23    rwhfl44m08    rwhfl41e12    rwhfl51h03    rwhfl8l23    rwhfl54b10    rwhfl10b01    rwhfl29o06    rwhfl7i11    rwhfl54o23    rwhfl4a14    rwhfl54c14    rwhfl32b24    rwhfl36p20    rwhfl40p20    rwhfl15m12    rwhfl7i12    rwhfl53m18    rwhfl3l20    rwhfl41p23    rwhfl30o06    rwhfl7i23    rwhfl55a19    rwhfl23p15    rwhfl52k15    rwhfl20l23    rwhfl44f13    rwhfl11e18    rwhfl28j10    rwhfl45p21    rwhfl21m23    rwhfl27p12    whfl7i12    whfl26p12    whfl7i11    whfl30a23    whfl50p16    whfl29o06    whfl32b24    whfl16h20    whfl54g17    whfl53m18    whfl4a14    whfl41p23    whfl9l23    whfl52k15    whfl30o06    whfl41h18    whfl15m12    whfl49b21    whfl45p09    whfl48e24    whfl40p20    whfl44m08    whfl54c14    whfl45g06    whfl36p20    whfl8l23    whfl46b08    whfl3l20    whfl54b10    whfl48c06    whfl19a08    whfl55a19    whfl51h03    whfl10b01    whfl34m15    whfl16a08    whfl20l12    whfl11e18    whfl2l07    whfl34m16    whfl5j21    whfl54o23    whfl11p07    whfl28j10   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os05g0169100 [Oryza sativa (japonica cultivar-group)] >gi|122169494|sp|Q0DKF0|RL102_ORYSJ 60S ribosomal protein L10-2 (Putative tumor suppressor SG12) (Protein QM1) >gi|158513181|sp|A2Y0T4|RL102_ORYSI 60S ribosomal protein L10-2 (Putative tumor suppressor SG12) (Protein QM1) >gi|1293784|gb|AAA98698.1| similar to human QM protein, a putative tumor supressor, and to maize ubiquinol-cytochrome C reductase complex subunit VI requiring protein SC34 >gi|113578310|dbj|BAF16673.1| Os05g0169100 [Oryza sativa (japonica cultivar-group)] >gi|215694643|dbj|BAG89834.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215767618|dbj|BAG99846.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1085
Evalue 1.80358e-116
Total Hit Count 500
Registered year
Contig Sequence     [ Download ]
>whfl_all.Contig2253 
tcTATTAGTACCATCATCACAAAATAGATAATATCTTCCATAACAAGGTTCGACACAACATTCAG*ACAAAATAACATAG*CACCACAGGCACtgtGGAA
*TCTAAGTTCCACACGG*TAAAATAAGTTTCGATAGAACGGATAGACTTCTTCTGCTAGATTATGCAGCAGACAGGAAAGCTTGTCCAGGGGCACGGTTT
GCAAGGCGGCCATGGCATCCGAGCAGCTTAGCGTTGACTCCATCAGGCAAGATCCTGCCCTCACTCTTGAACTTGAGGTAGTCATTGCGGTTGAACTTGG
TGAAGCCCCACTTCCTGCTCTCAATGATCTTTTGGCGGCCAGGGAACTTGAACTTGGCACGACGAAGGGCCTCAGTAGCATGGATGGCATTGTTGGGCTT
GCACCGCACAGAAAGGAGGACCTGCCCAATGGCAACACGGGCACAGACTCCCTGCGGCTTCCCGAAAGCACCCC*TCATACCAGTCTGGAGCCTATCAGC
CCCGGCACACGAAAGCATC*TTGTTGATACGGAGCACATGGAACGGGTGAACCCTGACCC*TG*AGGTGGAAGGCATCCTTTCCTGCATGCTTAGTCATG
TACTTGTTGCAAGCAATACGGGCAGCC*TCAAGAGCCTCACTGG*ACACATTCTCCTTCTCCCATGAGACAAGGTGAACACAGTGAGAGAACTCATCGAC
ACCCTTCTTCTTCATGCCGACATCATAGATCCTGATCTTAGGGTCAGGCACACCACGGCAGTACCTTGACTTGGGG*TATGGCTTGTTCTTGATCTGCCG
ATAGCACCTCGCAGGTCTTCTCCCCATGGCGACGGCGGCTCGAGGCAGGCGGCGGCTGCGGCGGCGGCGGGAGACGGAAGAGCTGCGAct
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