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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_SHC_all.Contig664
Contig Information
Length 533 bp
Tissue Shoot grown with cold treatment
Clones 2 Clones [Download: CSV  ,  FASTA ]
whsc10k16    rwhsc10k16   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os06g0332800 [Oryza sativa (japonica cultivar-group)] >gi|50725425|dbj|BAD32898.1| putative bundle sheath defective protein [Oryza sativa Japonica Group] >gi|50725497|dbj|BAD32967.1| putative bundle sheath defective protein [Oryza sativa Japonica Group] >gi|113595588|dbj|BAF19462.1| Os06g0332800 [Oryza sativa (japonica cultivar-group)] >gi|125555175|gb|EAZ00781.1| hypothetical protein OsI_22808 [Oryza sativa Indica Group] >gi|125597084|gb|EAZ36864.1| hypothetical protein OsJ_020347 [Oryza sativa (japonica cultivar-group)] >gi|215765751|dbj|BAG87448.1| unnamed protein product [Oryza sativa Japonica Group]
Score 413
Evalue 5.02781e-39
Total Hit Count 292
Registered year 2003
Contig Sequence     [ Download ]
>Wh_SHC_all.Contig664 
CTCGCACACGCCGTTCTCGAATGGCGGCCACCTCCGGCCTCACGGCCACCGTTACCTCCCCTCCGGCCGCCCTTAGAACCTCGCCTCCTCCCGTTCTCTT
CCTCCGCCCCATCTCTCGCTGCTCCAGGCTCCATTCCCTCAAGGCCAAGGCAGCAGCAAAGGACCAGGACGAAAAGAAGCCCGAAGCTACCAAAAAGAAG
GCATACAGTCTTGTTTGCACTGCCTGCGAAGGGAACGGCGCAATCGCATGCACCCAATGCAAGGGAGGTGGGGAGAATTTGGAAGACCATTTCGGTGGCC
GATTCAAAGCTGGAGGATTATGCTGGCTTTGCAGAGGAAAGCGTGAAATTCTATGTGGGAGCTGCAATGGCGCTGGCTTCTTGGGTGGATTTATGAGCAC
TGCCGATGACACTTCCGAATGAAATGCTTATGTTGTTATTTTTTTTTGCTTATGTTGTGTTTGACAAATTTTGGGAGATCTGTAACATTTTTACTTATAT
CCCCTCCAAGGAATGTGTCCCTTANAAAAAAAA
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