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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig34211  (registered. 2012)
Contig Information
Length 718 bp
Clones alternative view 80 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 5
Wh_h Spike at heading date 1
Wh_oh Pistil at heading date 3
Wh_CSEC Callus 1
Wh_EM Dormant seed with water absorption 7
Wh_EMI Dormant seed with water absorption after breaking 10
Wh_OKCS Seed DPA5 1
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 2
Wh_SHDr Shoot grown with dessication 2
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 1
WH_XN Leaves, plant was grown at constant 23℃ 2
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 1
WH_XA Root 8
WH_XB Root 13
WH_XC Root, treated at 50 microM Al for 6h 5
WH_XD Root, treated at 50 microM Al for 6h 4
WH_XE Seedling, infected with leaf rust 2
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 4
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115445581|ref|NP_001046570.1|| Os02g0284600 [Oryza sativa (japonica cultivar-group)]
Score 254
Evalue 8.00E-66
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig34211 
CCCTCCCCAACCCACCACCGGCGGCGGCGCAGCGCGAGGAAGAGGAAGCGAAGATGGTGAAGTTCCTGAAGCCGGGCAAGGCGGTGATCCTGCTGCAGGG
CAGGTACGCCGGGAAGAAGGCGGTGATCGTGCGCGTGTTCGAGGAGGGCACCCGCGACCGCCCCTACGGGCACTGCCTCGTCGCCGGCCTGGCCAAGTAC
CCGAAGAAGGTGATCCGCAAGGACTCGGCCAAGAAGACGGCCAAGAAGTCCCGCGTCAAGGTGTTCCTCAAGCTCGTCAACTTCACCCACCTCATGCCCA
CCCGCTACACCCTCGACGTCGACCTCAAGGAGGTGGCCTCCGGCGCGCCCGACTCCCTCACCTCCAAGGACAAGAAGGTGGGCGCCGCCAAGGCCGCCAA
GGCCAAGCTCGAGGAGCGGTTCAAGACCGGCAAGAACAGGTGGTTCTTCACCAAGCTCCGCTTCTAGGCCAGCCGTTTGACCGGTCGCGCAGGGTTGTCT
CTGCCGTTACTACTACCCGAACCCTTTACATTTTTAGTTGCTTGTTATCGGTGACTGTTGCTGCGCTTAAGATGTCCTGTTTTGGTATTGCCCATGAAGA
AGACTCTGTTTAGTGTGGATCTTATGAGATATGATGATGTTTCATGTGTTGAATCATGTGAAGAATAGATCTTTGTTGGAATTTTGTTGAGCGTTATTAC
TTCTTGAGAAAAAAAAAA
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