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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig14516  (registered. 2007)
Contig Information
Length 1065 bp
Clones 12 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 5
Wh_f Spike at flowering date 6
Wh_oh Pistil at heading date 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os11g0615700 [Oryza sativa (japonica cultivar-group)] >gi|12229920|sp|Q9LSU1|PSA5_ORYSJ RecName: Full=Proteasome subunit alpha type-5; AltName: Full=20S proteasome alpha subunit E; AltName: Full=20S proteasome subunit alpha-5 >gi|8671498|dbj|BAA96832.1| alpha 5 subunit of 20S proteasome [Oryza sativa Japonica Group] >gi|77551899|gb|ABA94696.1| Proteasome subunit alpha type 5, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113645500|dbj|BAF28641.1| Os11g0615700 [Oryza sativa (japonica cultivar-group)] >gi|215737179|dbj|BAG96108.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765321|dbj|BAG87018.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218186097|gb|EEC68524.1| hypothetical protein OsI_36813 [Oryza sativa Indica Group]
Score 824
Evalue 6.67807e-123
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>Contig14516 
cgatacctacgcacttgctggaaatgctgaaaaatatgTGTAGTAATTCTTTTTGGTGACACGTCTTAGTGCTACAAAG*ACATGACTGGACTGGGAGAT
GAGAATCAG*ATGCAACGCCCAAGCAGGCACTAATATCCCTTCAACAGTAGGCAGACAACCCAAACCCACAACAGAGTTCATACGTTCATTGTGCTTTAG
GGTTCATGGGAATACAAGAGGCTGTCTCACAAAGTGGCAATCCTTCACAACCTCGCGATGACCGCCTCAACCTCTGCAGGGGTGTAGAGGTGGTAGCTAG
GGGAGACCTTCGCAATGTCAACGTTGTTCGGGGTCACCTTTTCTTCCATAACCTGCTTCAGGATAGAAAGGGCTATGGTCTCTGCCTCAGCGATGGTCAG
TTCCTTGTTGTACTGCTCTTGTAATGAGCTATCAGCTCCTTCAGAGCCCGACCCAATTGCCTTGGCATTGCACTGCCAGAAGGTCCCCGACGGGTCTGTG
TAGTACATGCTGGGTCCATTTTCATCATGACCGGCAATAAGGAGAGAGACTCCAAACGGCCGTGACATTGATTCTTCATCACCTTCACCAAAGCGCAAAG
CTAAGTCACAGATAGCTT*GTGTGGTAGACTCTACTGTCATTGGCTCCCCATATGAGAACCTATGATT*CTGAGTCTCAACACGAGCATGCTCAACCAGT
GTT*CTGGCGTCAGCAATAAGGCCACTCATGGCACAGCccgACATGCTCATCAATTTCCATGATTTTCTCCACACTGCTTGGTTCCAGCAGCGGTGAGGT
GACACGTTTCTCAACAGCCAGTACAACACCATCCTTAGTCATCAAGCCGATTGCAGTGGAGCCCAACTTGATGGCCTCAATGGCGTACTCGACCTGGAAC
AGCCGCCCCTCCGGGGAGAAGGTGTTGACCCCACGGTCGTACTCCGTCCTCGTGAGAAACATCGTGTCGGCGGATGCGGATCGCAATTCGAAGCACTTGT
TTCTATTTCTACTACACGGGGTGGGTGCTTGGTGGTGTTTCTTCTTCGGAACCAagtactagtag
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