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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_VHS_all.Contig1474
Contig Information
Length 1520 bp
Tissue Shoot with heat shock treatment
Clones 78 Clones [Download: CSV  ,  FASTA ]
whvh10b22    whvh12e16    whvh12f11    whvh12l08    whvh12l18    whvh12o19    whvh1d02    whvh1k20    whvh2h19    whvh2k02    whvh2m19    whvh4d17    whvh4e14    whvh5f07    whvh5h07    whvh6c23    whvh7l05    whvh8a07    whvh8c01    whvh8e01    whvh8i10    whvh8k01    whvh8k08    whvh8k10    whvh9l23    whvh13e15    whvh14j10    whvh14l17    whvh14l18    whvh15d12    whvh15d23    whvh16k07    whvh16k08    whvh17f06    whvh17f18    whvh17j14    whvh18h21    whvh19c22    whvh19j04    whvh20b01    rwhvh10b22    rwhvh12e16    rwhvh12f11    rwhvh12l08    rwhvh12l18    rwhvh12o19    rwhvh1d02    rwhvh1k20    rwhvh2h19    rwhvh2k02    rwhvh4d17    rwhvh4e14    rwhvh5f07    rwhvh6c23    rwhvh7l05    rwhvh8c01    rwhvh8e01    rwhvh8i10    rwhvh8k01    rwhvh8k08    rwhvh8k10    rwhvh9l23    rwhvh13e15    rwhvh13m19    rwhvh14j10    rwhvh14l17    rwhvh14l18    rwhvh15d12    rwhvh15d23    rwhvh16k07    rwhvh16k08    rwhvh17f06    rwhvh17f18    rwhvh17j14    rwhvh18h21    rwhvh19c22    rwhvh19j04    rwhvh20b01   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|122246902|sp|Q10HD0|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|152013384|sp|A2XJ35|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa (japonica cultivar-group)] >gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group] >gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_011145 [Oryza sativa (japonica cultivar-group)]
Score 1226
Evalue 1.81579e-132
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_VHS_all.Contig1474 
GCGCGCATCCTAGCAACCGGCGGCGGCAGGCGGAAGGCGAACAAGAAGGCGGCGACGATGGGGCACTCCAACGTCTGGAACTCCCACCCCAAGAACTACG
GGCCCGGCTCCCGCGTCTGCCGGGTCTGTGGAAACTCCCATGGACTGATCAGGAAGTATGGGCTGATGTGTTGCAGGCAGTGTTTCCGCAGCAACGCCAA
GGACATTGGCTTCATCAAGTACCGTTAATTCACCTGTTCCTGGTACCCTGAAGTGAAGCTGATCAGGGATGAAGGATTGGAGCACTTAATAGAATGCTTA
ATTTCAATTCCAGTAATGTTTGCTCGTGGTTTTATGTTTTGATGGATACTGAATGATGTAATTGTTGAACATGAGTTAATTACCCATGGAGAAGTCTTTT
GTTCATCTCACTGAGCTCGCAGGCAGCCCCAGCCACCAGCGAAATGGCCGCGTCGGCGCTGCACCAGACGACCAGCCTTCCTCGGCACCGCCCCGCGGCG
TGATGACCTCGTCCGCAGCGTCGGCGACTTCGGCGGCCGCATCACCATGCGCCGGACCGTCAAGAGCGCGCCCCAGAGCATCTGGTACGGCCCTGACCGT
CCCAAGTACCTGGGCCCGTTCTCCGAGCAGACCCCGTCGTACCTGACCGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCCGGATTGTCGGCTGACC
CAGAGACCTTCGCCAAGAACCGGGAGCTGGAGGTGATCCACTCACGGTGGGCGATGCTCGGCGCCCTGGGGTGCGTGTTCCCGGAGATCCTGTCCAAGAA
CGGCATCAAGTTCGGCGAGGCCGTGTGGTTCAAGGCCGGTGCCCAGATCTTCTCCGAGGGCGGCCTCGACTACCTGGGCAACCCCAACCTGGTGCACGCG
CAGAGCATCCTCGCCATCTGGGCGGTTCAGGTGGTGCTCATGGGCTTCATCGAGGGTTACCGCGTTGGTGGCGGCCCCCTCGGCGAGGGCCTCGACATCA
TCTACCCAGGCGGCGCCTTCGACCCACTTGGCCTCGCCGACGACCCCGACACCGCAGCTGAGCTCAAGGTCAAGGAGCTCAAGAACGGCCGCCTCGCCAT
GTTCTCCATGTTCGGCTTCTTCGTGCAGGCCATCGTCACCGGAAAGGGGCCCGTAGAGAACCTCTTCGACCACGTCGCCGACCCGGTCAACAACAACGCG
TGGGCCTTCGCCACCAACTTCGCCCCCGGAAGCTAAATGTGTTAAGCCATCTGTCCGTCCATCGGACGAGATATGCATGTGTACTTGTACGTCGTGGATC
AACGTGTAGCTGCACGTACTTTGTGTGTTTATTTGTACCATGATCGAGCGAGCGAGATGACCTCTCGCTGGCTGCGCGGCAATGTAAATTAATTAAGCAC
GAGATGCACGAGCAAATGGATGGAAGAATCGTGTATCATTAGTACATTACTCGAGATCATCAACTGGCATGGCGTATATGGTACTTCAAGCTCATGAAAC
GGGACATTCGCAACGGCATA
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