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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25380  (registered. 2007)
Contig Information
Length 2269 bp
Clones 202 Clones [Download: TSV  ,  FASTA ]
Wh_CSEC Callus 19
Wh_DPA20 Seed DPA20 4
Wh_EM Dormant seed with water absorption 9
Wh_EMC Dormant seed with cold treatment after water absorption 17
Wh_EMI Dormant seed with water absorption after breaking 10
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 8
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 17
Wh_KMP Shoot grown under continuous light 13
Wh_KMV Shoot grown with continuous light after cold treatment 8
Wh_MS Seed DPA5 of DT3DL CS wheat 16
Wh_OKCS Seed DPA5 10
Wh_PCDAM Anther at meiosis 3
Wh_RDr Root of dessiccated seed 14
Wh_SHC Shoot grown with cold treatment 11
Wh_SHDr Shoot grown with dessication 8
Wh_V4816 Shoot grown under cold condition for 16days 4
Wh_V483 Shoot grown under cold condition for 3days 5
Wh_VABA Shoot with ABA treatment 3
Wh_VSCB Liquid cultured tissue 15
Wh_VWD Shoot grown with dessication 8
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0654500 [Oryza sativa (japonica cultivar-group)] >gi|5007084|gb|AAD37809.1|AF155333_1 NADP-specific isocitrate dehydrogenase [Oryza sativa] >gi|20161528|dbj|BAB90451.1| putative NADP-specific isocitrate dehydrogenase [Oryza sativa Japonica Group] >gi|55773928|dbj|BAD72316.1| putative NADP-specific isocitrate dehydrogenase [Oryza sativa Japonica Group] >gi|113533280|dbj|BAF05663.1| Os01g0654500 [Oryza sativa (japonica cultivar-group)] >gi|125527107|gb|EAY75221.1| hypothetical protein OsI_03110 [Oryza sativa Indica Group] >gi|125571425|gb|EAZ12940.1| hypothetical protein OsJ_002765 [Oryza sativa (japonica cultivar-group)] >gi|169244431|gb|ACA50489.1| NADP-specific isocitrate dehydrogenase [Oryza sativa Japonica Group] >gi|215692671|dbj|BAG88091.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1383
Evalue 4.92417e-171
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25380 
AGCATCGACTGGAGAAAATTCTCAATCAACTGAGACTAGCAAAATTGGTTTCAAACTCGACTTGTTTAAAAAAAACGCTGGCAGCCAGAACTCTTTTCTA
GTAAGTAGCAGGATTTTTCCTGCTCTCCTAAAAAAAGGGCAAACTACCAAGCAAATTAAACGAGCAAACTATGCATCTCCATTCAAATGTAGAAGCTGCT
GGTTAGACATGACACAATCATCAGATGTGAATAATGGTTCTATATGTCCTTTATTGTGAGCCCCACTTACATAACATCAGCATCTACAGAATCGCTTGCA
TGTTTGACAATAATATGCGATGGTGCAGTAAAAGCTCGTTCTGTTCACAATGAAAGCATGACAGGTAATGGCGACATAACCAAAATGACTTGAATCGATG
AGTAATGACTATTCAAGCATTGAAGTGGAAGAGGTCTTTCACAGTCTTGATTTGAGCTCAGCAGCAACAGCGTCAATGAACTCTTCAGTGTTCAGGTAAT
CGCTTCTTGTAACTTTTGAGGATCCATGGACAAGGAGTGCAAGGTCCTTGGTCATCTTCCCAGACTCCACAGTTCCGACGCACGCTTCCTCAAGTTTCTG
TGCAAATTCAAGAAGTCTAGCATTCTCGTCTAGCTTTGCCCTGTGTGCAAGTCCTCTTGTCCAAGCAAAGATTGAAGCAATGCTGTTTGTGCTGGTTTCA
CCACCTTTCTGGTGAACACGGAAATGGCGGGTAACTGTGCCATGGGCAGCTTCAGCTTCGATGGTTTTACCATCAGGGCACATCAATACTGACGTCATCA
AGCCCAAAGAGCCAAAACCTTGAGCTAAGAAATCACTCTGCACATCTCCGTCATAGTTCTTGCAAGCCCAAACATAGCCTCCTTCGCTCTTAAGTGCATA
GGCAACCATGTCATCGATGAGACGATGTTCATACCATATTCCAGCAGCCTCATATTTGGATTTCCAGCCAGCTTCATAGATCTCCTGGAAAATGTCCTTG
AACCTGCCATCATATTTCTTAAGGATTGTGTTTTTTGTGCTAAGGTACAATGGCCATTTCTTCTCATAAGCGATTGCCATAGAAGCTTCAGCAAAACCTC
GAATTGACTCATCTGTGTTGTACATAGCCATGGCGACTCCTCCAGCACCAGTGAAGTTAAAAACCTCAAGGTCAACCGTCTCGTCTTTTCCCTCGAAAAC
TAGTCTGAGTTTGCCAGGTCCCTTGAGAACGGCATCAGTTGCTCTGTACTGATCACCGAAAGCATGCCTTCCAATGCAGATGGGCTTAGTCCCATCCTGG
AACAAGCTTTGGGACATTCTTGCATATAATTGGCTCTCTGAACACGGTGCCATTTATAATGTTCCTAATTGTGCCATTTGGGCTCCTCCACATTTGTTTT
AGGTTGAACTCCTTAACCCCGCCGGAGTGAGAGCATGGCCAAGAGGAGGGTCAAGGGAGTCACAAGACGCTGGATCTTGGGAGCCTTGCTCACCTTCTTG
CCCTTCTTGTTAAGGAAGGTCCTGCGGTACGTGTTGACATAGCTGCGGACATCATCGTCCTTGCCAAGGTTGAAGAGCTTCTTGATCTTGGAAGCCCTCT
TGGGTCCCCTCATCCTGGGCTTCTCAGTGTCAGTAAGGCCTGGCAGATCATTCTCACCCTTCTTGACAATGACCAAGTTGATAACAGATAGGTCTTGGCT
GACAATGCAACCACGGACGGATTTCCGCCTGCGCTCACCATTACGCCTGCCAAAACCACGGAAGCAAGGTGTGCCCCTGTGAAGCAGAAGGCGGACACGC
CCAGAAGTTAGCACTCCTTGCTTCATCGGGAAACCCTGCTTATCGCAGCCACCCATGATCTTGAAGATGTAACCCTTGAATTCCTCACCCAGAAGATCAC
CAACTACCTCCTGGGAGATTCTCTTGTCATAAAGGTTGCGCAGCTTCTGGTCGTCATCGATCTCGACCTTCTTCTGGCACCCCGTGGTGGGGTTCGCGAT
GTTCAACTTCATGGTGGAGTCGCGGCACGAGATCGCCGGCGGCGAGCAACCCGAACGCTGGGTGGAGCGGCGGCGGCGCGGTTGCTCGAGGGGTAGGGTT
TTCCTCGTGCCGAATTCGGCACGAGGCCTGTGCATGTAAATTCTTCCTCTTTTATTCTGCCACCCTTGTTTTATTGGAATCCGGTGCCTACGAAAGGCTC
TATACTACTATTACAAGAACATGATCCAGGGGGCCACGAAGCACTGTCATGTTACACACCCAATAGAGA
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