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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig13025  (registered. 2012)
Contig Information
Length 1111 bp
Clones alternative view 41 Clones [Download: TSV  ,  FASTA ]
Wh_f Spike at flowering date 3
Wh_EM Dormant seed with water absorption 2
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 2
Wh_VSCB Liquid cultured tissue 2
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 2
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 2
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XB Root 2
WH_XC Root, treated at 50 microM Al for 6h 7
WH_XD Root, treated at 50 microM Al for 6h 4
WH_XE Seedling, infected with leaf rust 2
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 4
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 2
WH_F/WH_R 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115474857|ref|NP_001061025.1|| Os08g0156700 [Oryza sativa (japonica cultivar-group)]
Score 437
Evalue 1.00E-120
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig13025 
TTTTTTTTTTACCTTTCCAAATGGCACACACATTCAACTATGGACTGGCAATTTCACAGTACAGGTCTAACTGTGAACAAAAGCAATTGATGCATTTTCC
AAGTTACAGCGTCATCATAGCGCACAACTCACCAATGAAATTAACAACAAAAGAAGCTTAAACTAGCTCAATATTTCTCACACATGTACTCCTATATTGA
CAAAACATAAAGGAGAACTTGAAGACATTTGATCTCGAATGATCTTTTCAAGTTCCCAAACATGACTAGCAAGTCCAGTTCCCTTCGATACGGTCAAGTG
ATACGGATGAAAAGAATTATGACTTCATCATGTAGCCCAGGAAGATCCCGATCAAAGCTACAATTATGACAATTACAAAGGAAAACCCTCCACCGCGCCT
CTTGCTGACTTCCCGTCTCATCATATCAAGTTCCTGTCTAATTTTATGGTTCTGTTGAATTGCAGAATTCTTTTCTTCGGTCAACTTGGAGATCAAAGCT
CCAGCCTCTAAAGATTTTTCTTGGGGCTCAATGCGTTCTCGCAGTGCCCTGGTGAATCCCCCAGCAGGACCATCTCCATTTTCTGATTCAACCCTAGATG
GGGAGCCTTCCTCGGATTCTTCAGGAACTGGAGATGGTGGCTGTGGAGGTGCAACATAGGTGACACGTAATTTCATCTCTTCAATCTTATTTCCAGATTC
CTTCATAAACATCTCTCCTGTAACATCCTTCACATTTATGCCAGAGGGTGCGACAACGCTCTGGACTAGGAACTTATCTTTGCACTGCATGTCAGATGGT
ACTTCTCGCTGTGCTTGCATTGTCACAACAACATCGCATGTAGATCGTGGCAAGACAACCCCTGTGTTGGGCCGCACAGAGTATTTCTTTGGGCTTGTAG
TTTTCACCTTGAAGGCGATGTAGTCGTCGCTGAGATTCGACAGCTGCATCGAGCAGGAGATCTGCTTCTTCAACTCAAAGGGGAAGCGGAGCTCGATGGG
GTCGATGCGGAGGAGCTCGCCGGCGGGGGCTGGTCCGGGGGAGGCCATTGCCGGAGAGGGGGAGGCAAAGGGGAGATCTCGGGGCGGTGGGTGCGAGGAG
GGGGAGAAGAG
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