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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig16258  (registered. 2007)
Contig Information
Length 2327 bp
Clones 123 Clones [Download: TSV  ,  FASTA ]
Wh Spike at meiosis 18
Wh_SL Seed DPA30 19
Wh_dL Crown of seedling 12
Wh_e Seed DPA10 5
Wh_f Spike at flowering date 8
Wh_h Spike at heading date 11
Wh_oh Pistil at heading date 8
Wh_r Root 14
Wh_yd Spikelet at late flowering 14
Wh_yf Spikelet at early flowering 14
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0821100 [Oryza sativa (japonica cultivar-group)] >gi|29124135|gb|AAO65876.1| heat shock protein cognate 70 [Oryza sativa (japonica cultivar-group)] >gi|108711797|gb|ABF99592.1| Heat shock cognate 70 kDa protein 2, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113550195|dbj|BAF13638.1| Os03g0821100 [Oryza sativa (japonica cultivar-group)] >gi|125588425|gb|EAZ29089.1| hypothetical protein OsJ_012572 [Oryza sativa (japonica cultivar-group)] >gi|215697587|dbj|BAG91581.1| unnamed protein product [Oryza sativa Japonica Group]
Score 2244
Evalue 0
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>Contig16258 
ttcggcacgaggcAGCAGCCGCCGCCAGCAGCTGCGCAAAGGCTCGACAAACCCTAACCCTAGTCCATAGCTAGCTTAGCTTCCTTCCTCTCGATCTAGC
TAGAGCCATGGC*GCCGACCAAGGGCGAGGGGCCGGCCATCGGCATCGACCTCGGCACCACCTACTCGTGCGTCGGCGTGTGGCAggcACGACCGCGTCG
AGATCATCGCCAACGACCAGGGCAACCGCACCACGCCCTCGTACGTCGCCTTCACCGACTCGGAGCGCCTCATCGGCGATGCCGCCAAGAACCAGGTCGC
CATGAACCCCATCAACACCGTCTTCGATGCGAAGCGTCTTATTGGCAG*AAGGTTTGCTGATGCCCCTGTCCAGAGTGATATTAAGATGTGGCCGTACAA
GGTTATTCCTGGCCCCGCAGACAAGCCTATGATTGTAGTGCAGTACAAGGGTGAGGACAAGCAGTTCTCAGCTGAAG*AAATTTCTTCCATGGTCCTCAT
CAAGA*TGCGTGAG*ATCGCTGAGGCTTACCTAGG*AGTAACTATTAAGAATGCTGTTGTCACCGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCA
ACCAAGG*ATGCCCGGTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAATTGCTTATGGTCTTGACAAGAAGGCTAC
CAGTGTCGGTGAG*AAGAATGTGCTTATCTTTGACCTTGGTGGTGGCACTTTTGATGTCTCTCTCCTTACCATTGAGGAGGGTATTTTTGAGGTGAAGGC
CACGGCTGGTGACACTCACCTTGGTGGGGAGGACTTTGACAACCGTATGGTGAACCACTTTGTCCAAGAGTTCAAGAGGAAGCACAAGAAGGATATCAGT
GGAAACCCCAGGTCTTTGAGAAGGCTCAGGACTTCTTGTGAGAGGGCGAAGAGGACCCTTTCTTCCACTGCCCAAACCACCATTGAGATCGATTCACTCT
TCGAGGGAGTTGATTTCTATTCCACCATCACCAGGGCCAGGTTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGCATGGAGCCAGTGGAGAAGTGCCT
GAGGGATGCCAAGATGGACAAGAGCACTATCCATGATGTTGTGCTTGTTGGTGGTTCCACCAGAATCCCCAGAGTTCAGCAGCTGCTGCAGGACTTCTTC
AACGGGAAGGAGCTCTGCAAGAGCATCAACCCTGATGAAGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCAATCCTCAGCGGTGAGGGGAACGAG*AAG
GTGCAGGACCTTCTCCTCCTGGATGTCACCCCACTGTCTCTTGGTCTTGAGACTGCTGGAGGAGTCATGACTGTGCTCATCACCAGGAACACCACCATCC
CCACCAAGAAGGAGCAGGTCTTCTCCACCTACTCCGACAACCAGCCTGGTGTGCTCATCCAGGTGTTTGAGGGTGAGAGGACAAGGACCA*GGGACAACA
ACCTGCTCGGCAAGTTTGAGCTCTCTGGCATCCCGCCTGCGCCCAGGGGTGTTCCCCAGATCACTGTCTGCTTCGACATTGATGCCAACGGTATCCTGAA
TGTCTCTGCTGAGGACAA*GACCACTGGCCAGAAGAACAAGATCACCATCACCAACGACAA*GGGCAGGCTGAGCAAGG*ACGACATTGAG*AAGATGGT
CCAGGACGCAGAGAAGTACAAGTCTGAGGACGAGG*AGCACAAGAAGAAGGTTGACGCCAAG*AACTCCCTGGAGAACTACGCCTACAACATGAGGAACA
CCAT*CCAGG*ACGAG*AAGATCGCCTCCAAGCTGCCTGCTGATGACAAG*AAGAAGATCGAGGACGCCGTTGACGCCGCGATCCAGTGGCTTGACGCCA
ACCAGCTCGGTGAGGTTGACGAGTTTGAGGACAAGATGAAGGAGCTGGAGGGCCTCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCCGGTGCTGG
CATGCCCGGAGGCATGGACGAGGACGCGCCGGCTGCGAGCGGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGTTAGTCGCTTTTATATAGT*GAG
AAATACACTATACACCATTTTATTCAGTCCTGGGTGCCAATCATATCACCTGGGCT*GGAAGTTTTGTTGTACTTTTTGGT*CTGTAGCATCACGAGA*C
TTGTGTGTGTCGTGAACAATGCAATGATG*CATGTTTTGGCTCATTGTTGATTTCAGCTTAATG*CTTATTATTTGGACTACCCTACCCGTGTGATTTCA
Ttctgaattcttagcttaaaaaaaaaa
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