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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig24551  (registered. 2007)
Contig Information
Length 718 bp
Clones 32 Clones [Download: TSV  ,  FASTA ]
Wh_EM Dormant seed with water absorption 2
Wh_EMC Dormant seed with cold treatment after water absorption 2
Wh_EMI Dormant seed with water absorption after breaking 8
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 4
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 1
Wh_KMP Shoot grown under continuous light 2
Wh_MS Seed DPA5 of DT3DL CS wheat 4
Wh_RDr Root of dessiccated seed 2
Wh_V483 Shoot grown under cold condition for 3days 2
Wh_VHS Shoot with heat shock treatment 2
Wh_VSCB Liquid cultured tissue 3
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os06g0134000 [Oryza sativa (japonica cultivar-group)] >gi|109940157|sp|P35686|RS20_ORYSJ RecName: Full=40S ribosomal protein S20 >gi|55296170|dbj|BAD67888.1| 40S subunit ribosomal protein [Oryza sativa Japonica Group] >gi|55297192|dbj|BAD68866.1| 40S subunit ribosomal protein [Oryza sativa Japonica Group] >gi|113594753|dbj|BAF18627.1| Os06g0134000 [Oryza sativa (japonica cultivar-group)] >gi|125553935|gb|EAY99540.1| hypothetical protein OsI_21509 [Oryza sativa Indica Group] >gi|125595951|gb|EAZ35731.1| hypothetical protein OsJ_019214 [Oryza sativa (japonica cultivar-group)] >gi|215692797|dbj|BAG88241.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215741311|dbj|BAG97806.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215767736|dbj|BAG99964.1| unnamed protein product [Oryza sativa Japonica Group]
Score 591
Evalue 2.35965e-59
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig24551 
TTTTTTTTTTCTGAAAACAGGTCCAACAGCGATCCATGTATAAACATCCATTCCAGCACACACAACAGGGCAACGAAAATTGACGGAAGATAACTTAGGA
CGATAGGCACTTAGAATCACGAAGCAAAGAACCTAGTCATACAAAACCCAGTTCTCATACTACAGAAAGTTTCAAAAATATCTTGGTACGTTGGAGGTGT
CTCTCCACCCTTGTAAAAAGATTTAAAGACACATATCTTGGGGTAGCATAACTACTGGTCGCTGATGGTCACTTCGACCTCGACGCCAGGCTCGATGGTG
ATAGAGGTGATCTGCTTGACAACGTCTGGGGAGCTGACAAGGTCGATCACCCTCTTGTGCACCCGCATCTCAAACCGATCCCAGGTGTTGGTCCCTTCTC
CGCAGGGGGACTTCCTGGTGGTGATGTTGAGCACCTTGGTGGGCATCCTGACGGGGCCCTTGACCTTGAGCTGCTTCTCCTTGGCGCCCTTCACCAGATC
CGAGCACACCTTCTCGAGGTTCTTGACGGACTTGGAGGAGAGGGTGATGCGGATGCGGTGCTGCACCTCCTGCGTGCCCTCGAACCCGAGCTTGCCCGAC
TTCATGGGCGGCGCGTAGGCCAGCTCCGTCGCCATGGCTGCCGGTGGGGAGGATGGGAGGGAGGAGGCCGCGGCGCTGCGGGCGAGCTAGGGTTGAGGAG
GCGGCGGCGGCGGCGCTG
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