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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig24801  (registered. 2007)
Contig Information
Length 1427 bp
Clones 41 Clones [Download: TSV  ,  FASTA ]
Wh_CSEC Callus 2
Wh_KMP Shoot grown under continuous light 6
Wh_KMV Shoot grown with continuous light after cold treatment 6
Wh_PCDAM Anther at meiosis 2
Wh_SHDr Shoot grown with dessication 4
Wh_V4816 Shoot grown under cold condition for 16days 1
Wh_V483 Shoot grown under cold condition for 3days 2
Wh_VHS Shoot with heat shock treatment 10
Wh_VSCB Liquid cultured tissue 1
Wh_VWD Shoot grown with dessication 7
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os09g0327400 [Oryza sativa (japonica cultivar-group)] >gi|48716905|dbj|BAD23600.1| apospory-associated protein C-like [Oryza sativa Japonica Group] >gi|113631123|dbj|BAF24804.1| Os09g0327400 [Oryza sativa (japonica cultivar-group)] >gi|215697032|dbj|BAG91026.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1457
Evalue 2.72119e-159
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig24801 
TTTTTTTTTTATCCCAAATTTGAGCAGCCCTTGCCTGTTTCTCTACCGTAAAAAGAGCAACAATACACTCAGAATATATTGTCTACAGCTAGATACATCT
TACATGGAAGAATGTTAACCCTGTCTCATTCAACTATGAGCAGAACATACTTACAAGATAGCCGACCACCACAGAGAAAGGAAATAAGAACTGAATTACT
TATTTACTTATAAAACATAAAATAGTTATAGGATGTACATCTGATGTGAGGGCATAAGTTGAAGTACACCGGGGAATGACACATGTTTACACTGCCAGAC
ACGTAAAAAGGCCCTTTGACAACATACTCGCCGCACTGTACTGTTCTCAACCCATTAGCTTCAGACAAGTTCAATTTTCTGCTCTGCCACCCAAGATTCT
TTTGGACCCAGCTGTACTGTTTCAATCTTTGCATTTTCAACACAAACAAAGTCTTTGTAGCATGCCTCCATCTGCAAGTGAGGATTCCACAACACTGCAT
CTGACCAGTTTGTGTTTGAGATTACAATTTTGTCACCCAATCCATTGTCCAGGGTAAGCTCACTCGGTGCACCAAGGTAAACACAGTCGACAAATCCTGG
AAAGGTCACCTCGTCCCTTTCTTCTTTGCCCTCCAGAGGATTTTTAGGGTCAGGATCCTTATTGAGGGTCTTGCTACCTTCGAGACCTTTCACTGAAACA
CCAGCAATTGAAGCACTGAAATAAGTGTGGAGGGCTGAGTTGAATGAGAAAGGTTTATCGTCTGTATTTATTATTTTCAGGGTAGTTGACAGGCTTGTAG
AGTGCAGCACAACCTTGTATAAAGCTTGGAAACTAAAATCCCACATTGAACGGCTGTACGAGTCGTCTTTTAGTTCCAAAGTTACAGTTGGATCTCCTTC
TGTGACTTCTGAATCAGTAATAGACCAATTCACATTCCTTGCGAATCCATGCTGCTGCATGGGGCCGGGGCCAAACTGGGGAAAACAATGTGGAATTCCA
CCGCTGATGGGTTTCTGGCCGTTGAACACAGCATCTGGTCTGACAAAGAGCAGGTCCTTTCCACTGGGAACCTTCCAAGATGTGACGCATGCTCCAAATA
GATAAATCTCAGCCTCACTCCCGTGCGGGGATTTGAGGCTGATCTTCGGCAGGCCGCCGTTGCCCTCGGAGACGGCCACGCCGGGCGCGTACACCTTCTG
CCCCGCGCTGGCCATGGCAACCACCCCGAATCGCCTGTAGCGACGGGCTGAAGTGGAGGAGGAGGAGGAGGAGGCGGCGAAGAGGGCAGGGACGGTGAGC
GTGCAGGAAGCCGCCATTTCTGCTTGGCCTCTCGGAGAGGCTGAGACTTCGGTGGTGCTCTGTCTGGTTTTAGAGTGGCCGGTGCCTTGGATCCTCTGTT
CAGTGAAACGCTGTGTGCCGATCTGTG
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