Home About update informationSite map Contact Us
Japanese | English  
Genome / Development
cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25328  (registered. 2007)
Contig Information
Length 2836 bp
Clones 134 Clones [Download: TSV  ,  FASTA ]
Wh_CSEC Callus 24
Wh_DPA20 Seed DPA20 7
Wh_EM Dormant seed with water absorption 18
Wh_EMC Dormant seed with cold treatment after water absorption 16
Wh_EMI Dormant seed with water absorption after breaking 23
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 2
Wh_KMV Shoot grown with continuous light after cold treatment 6
Wh_MS Seed DPA5 of DT3DL CS wheat 7
Wh_OKCS Seed DPA5 3
Wh_PCDAM Anther at meiosis 2
Wh_SHC Shoot grown with cold treatment 4
Wh_SHDr Shoot grown with dessication 9
Wh_V4816 Shoot grown under cold condition for 16days 2
Wh_VSCB Liquid cultured tissue 7
Wh_VWD Shoot grown with dessication 4
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os05g0498700 [Oryza sativa (japonica cultivar-group)] >gi|48475219|gb|AAT44288.1| putative B2 protein [Oryza sativa (japonica cultivar-group)] >gi|51038049|gb|AAT93853.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|113579502|dbj|BAF17865.1| Os05g0498700 [Oryza sativa (japonica cultivar-group)] >gi|218197041|gb|EEC79468.1| hypothetical protein OsI_20486 [Oryza sativa Indica Group]
Score 1358
Evalue 1.89815e-147
Total Hit Count 105
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25328 
TTTTTTTTTTAGACGCAGGTGAGAATTACATATTTCAGAGTACTGCAAAATTAATAGCTGCATAAAATTCAGTCACAAACACATATAATCCTCACATTAC
ATAAAACTCAGTACTGGAACATAGCCAGACTAGTATTAAACAACTAAATTTGACCAAACACAGGTAAAAGCAACTTCCACAGCCAAAACAACAGAACAAA
TCAAGAATCACTAGACAATGCCATCACCCCTCAGAGTTCCGCTGCCTGGATGCAAGATGATGCTTACCGCCTACTTGGATCGCTGCCTCATCTTTCGGCG
CTTCCTCTTGAGCCTCCTCATCCTCTTCTTCTTCCACTTGGCCCTCATCGCGGCGGCGGAGTCGGCCTCGCTCTCCTCTTCGCGGCGGCGGAGTCGGCGG
CGGAAGTGTGTGGACGGTCAAATGCAAGGTTCCAACTTTCCAAACCAAGGTAAGGTACAGAGACAACAGATACACTCCCAGCATCAACCGCCCTCACTTT
GGGGCATTCATGATGCATCACAACAGTATCCCCCGTCTTTCGGGGTTTCCCCGCTGGCGGCGGGCATACTGCACTACAAGTACATAAATATGAAGAACAT
ACGCATCACCGAGATTACGGACAGACGGCACCGACACAGACAGGCTCACATCTTTAGAGGCCTACTTCTTCCAAGCACCAGGTCCTTTCTGGGGGAAATG
CACCACCAACCAACAGCTTGCGCTTTCATAGACGACGGACGGAACAGATCATTGTGAAAACATCTTCCACAACTTACAGGGATGATATTTACTAAAAAGA
ACCACAGAGCAACCACAACCATGTTCCAAAGCAGATCAGGCGTCTTCCGTCTTGCACAGGTCCAGCAGTGACAGTGTCTCTGCTATGGAGAGCTCGAGGC
GGAATTTAGGACCATCATAGTGGTGCAGCACTGGCCTAAAAGCATCCTCTTCCAAGGCCTTGCAAAGCCTTCTAATGCGGATCCTCACCTGTGCTGGGAA
TCTGGATTCACCTTTGCACTTCTTATCTTCCCAAGCGGTGGGATCAATGTTTGATCCTCCAAAACTAGCAGCCTCAAACACCCCATGTAGCTGATGGGTC
GTGTAGTTGTAGAGGAAAAGAGGTAGACCAGGAGTGATGGCTCGGACTGAATCACGATATCTTGCTGGCAAGCCAAAAAGCTGTCTCTTGAGATCCTCCT
GCATGGTATCATTGTTGCAGACAAAGATGTATCCACCAAGAACTTCATTCCTTGGTAGCATCTCGCTTGTTGGTAATGTTTTGAAGCGCTTGTCAACAGA
GTTGTTGTTGCTGTTGCCTCCATTGTTGTTGTTACCACCATTGTGTTTGCCGTTTGCTTCCTTCCCATTCTGATTATTCGGATATTTGTTGACCCCGACA
TTCATCTTGAATGAATTGACATTACCGTTGTTTCCCTTGGGGTACATGGGGTTCATGTTATAGGCCATGTTGCGGAAAGGGTACTTCATGGCAGCCTCGT
TCATCTTGAGATCGTTCATCTTAAGATCCAGGTTCATGAGGCCAAGATTGAGGTGGTCCATCTTGTTGTCTTCTTGGTGGTAGGATTGCTTATCCCATTG
CTTCACATCAGGGACGGTGTTCATCCTTGCATACTCAAAGTCATTCATCCTCTCAGCCTTTGACTTTGTGATCTCAGCCAGCTTTGATGTCATGAGAGAC
CATTGGCGGTCCTCCACCACCTTTGATTGCCCACGGAACTCATCTCCGAGATGCCACAAGTTGTCCATAGCTCAGTTCAAGCTCTCTGCTCGATTCGGCG
CCGGATTCCGGCGGGGAGGGCGCTGGATTTGGGGGCGAATCGGGAACGAACTGCTGCGAGGAGGAGAGGAGTCGGCTCGGCTGGCTTGGCGTTGGCTCCC
ACTTCGCTCCGCCCACACGGAGTCCTCGTGCCGAATTCGGCACGAGGGTCACGCGACCCAGAAACTGCATTAACCATAGATCGGTAGCACTAGCCACACC
GCTAGGTTTACAACAGGACACACAAAGGAAAGAAAATTACAGACCAGTCCCTGTTTTTTGCATGGCAGGACCCCGAACAGGAAACAAGAAATGCAATCGG
GTCCAAATCATCTCCCAACCGGATCCAATCCCGTCGTCGCCGGGGACGTTAGCACTTGGTACGTCGGGACCTCCGCAGCTGCTTCTCCCATAGCACAACA
CCGCAGAAGAAGAAGCCTTAGACTCCGATTCGGAGATGAACTGCCTCCCATCTAGGCACCAGGCCGGGAGGAAGAGAAAGGGCCGCCCTTCGGCCAGCAT
ATTCAATGGCGAGACGGTGAGGACCGGCTGCCGACAGCCGAAGCGGGCGCCGTTGCCTCGTCTCAAACCCATTGAGGATGAGCTCCTTCCCAAACTGCAA
AGTCCAGCTCGCCGCCTCTCCTTCTTCCTCCATCCACCACCACGATGGCTTGAAAAGAAAGGGAAGAGCAGCCGGGCCTCCACCTTAACAGGAAACACAA
CGAGCTTATTGAAGGAGTCGCCGCCGTCATTTCCTCCGGTTGCACGCAGCACCTCGCCACCGCAACCATCAGAAACGCCGACGCTAGCCACCAGGCGCAG
CTCGCGTGCGCCGGCGGCGCGCTCCACCACGGCATAGCGCCAGACACCACTTGGGCAAGACTCGATCTAATCCTAGACCTGCTATTTACAGATCTCCACA
CACCTCTCCCATCTCTCGTCCGGCCGGCATCGCCGTCGTCGGAGATTGGGGATCGGGCGGGATCGGGGAAGCTACAGGGCGACTCTCAAGGGGCTCTCTA
GAAGGGACTCGCTCCTGCTTTGGTTCGGCGGCACGA
page-top