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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig7285  (registered. 2012)
Contig Information
Length 1233 bp
Clones alternative view 40 Clones [Download: TSV  ,  FASTA ]
Wh_e Seed DPA10 4
Wh_yd Spikelet at late flowering 1
Wh_CSEC Callus 4
Wh_DPA20 Seed DPA20 2
Wh_EMI Dormant seed with water absorption after breaking 1
Wh_VHS Shoot with heat shock treatment 2
Wh_VSCB Liquid cultured tissue 3
Wh_VWD Shoot grown with dessication 2
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 1
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 3
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 1
WH_XN Leaves, plant was grown at constant 23Ž 2
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 1
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 1
WH_XA Root 1
WH_XB Root 1
WH_XD Root, treated at 50 microM Al for 6h 1
WH_XE Seedling, infected with leaf rust 2
WH_XF Seedling, infected with leaf rust 5
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 1
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115448363|ref|NP_001047961.1|| Os02g0721600 [Oryza sativa (japonica cultivar-group)]
Score 578
Evalue 6.00E-163
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig7285 
AAGCGGATGTCGTTCATCGTACAAGTCACAACATCATCGACGACAATGTTCACAGCGTCACTCGACTTGAGTCAATATGCCTTACAACTAACTGGAACCT
AAACATATATGATGAGATGCGCTCTACCCCGGCACACAGGCTATAGGCATCTGTACATTTGTTTATATACACATACAAGGATACAACATTTATTAATTTG
AATTATGCAGGTCAACTCGAGAAATTCCGATTTCAGGGAGACACCTAACTTATGCTGCGAGATTCAGTGCAGCTGTGGGGGGACAGACATGCAGGCCCGA
CATCCGCTCCGCTTTAGCCTCAAAGCAGCGTGTCATGGTACCAATTGTTATACAGACGCCCAAACTGGAGGAGGCTACCATATGTTCTATCCCACACGCC
GACGAAGAGGGCGTCTGTGTCGGGGCTGAAAGACATCCCAGATATCTCGCCGAAGAAGTCCAGCTCTTGCCTTCTGTTGTAGTCGCTCTTCACGTCAAAG
ATATGGACAAAGTCCGCTGGTTCCGCCATCGACAGGAACTGCCCATCCGACGTAAACCGGATTGATCTGATAGCTCCAAGGTTACCCTTCAATACATGGA
CTGCTTTTGATAGGTTCCTCGCATCCCAGATTCGGCATGTCTTGTCTTGGTTCCCAGTAGCAAACGTTCGGCCATCAGGGCTCCAGGCTGATGCAAATGA
GAAGTCGTGATGACCTTTCATGGAATGAAGAGTCTTTCCTGAATTGGCATCAATAAGTAAACCATTAGGATCGTCCCCCACAATAACAACAAGCTTCCCG
TCAGGACTCAGAGATGTATGATTTACTGGCCAATCAAACTGAAAGTGCTTGCATAACTGGAATCTCTCCATGTCATAATCTCTTACACCGGAGTCATTAT
TCGATGCCATGAAATGAACAGCACCACTAGCAGTATTGAATATCTCAACTGCATTAGTAATAGCATTATCATCATATGTTGTTCGACAGCAAAAGCTTAT
TCCTTCTCGATCAAGGTGCTTGCAGATTAGCTCCCCTTGAAATCCGCCAGCTACCAGCAAATTGTCCTTGACTGCCAAGGTACTAACTTGAGTCTGAGAA
AACCCCTCTAATAGACTTCCAGGGTGCTTCTCCCTTGGTGCCACATGACCTTGGACATTCATAAGTTCAGTGTCCACACCACTCAACGCTGACCAGTGAA
GCACTGAGTAATGTGACATTAGGTAGACGTCAT
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