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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig22809  (registered. 2012)
Contig Information
Length 877 bp
Clones alternative view 136 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 2
Wh_e Seed DPA10 3
Wh_r Root 3
Wh_yd Spikelet at late flowering 2
Wh_SH - 1
Wh_CSEC Callus 4
Wh_DPA20 Seed DPA20 2
Wh_EM Dormant seed with water absorption 2
Wh_EMI Dormant seed with water absorption after breaking 3
Wh_KMP Shoot grown under continuous light 2
Wh_KMV Shoot grown with continuous light after cold treatment 2
Wh_OKCS Seed DPA5 1
Wh_PCDAM Anther at meiosis 6
Wh_SHC Shoot grown with cold treatment 4
Wh_SHDr Shoot grown with dessication 2
Wh_V4816 Shoot grown under cold condition for 16days 2
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 3
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 3
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 8
WH_XN Leaves, plant was grown at constant 23℃ 1
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 7
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27℃ ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 12
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 4
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 3
WH_SP 5
WH_XA Root 1
WH_XC Root, treated at 50 microM Al for 6h 3
WH_XD Root, treated at 50 microM Al for 6h 9
WH_XE Seedling, infected with leaf rust 3
WH_XF Seedling, infected with leaf rust 2
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 7
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 8
WH_XV Leaves, plant was grown at constant 23℃ 2
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 4
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27℃ ) 4
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|242055755|ref|XP_002457023.1|| hypothetical protein SORBIDRAFT_03g047300 [Sorghum bicolor]
Score 254
Evalue 7.00E-66
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig22809 
ACAAATTTGGTGCACCTACAGGCCATTCAGTGTGACAACATCCAGCACCAGAAAGATGCACTGAGACTGTTGAACAAGGGACATTTTTTTTTTTTCACAT
ACACAACTAATCACATCAAATTAAGAATATGTATGTCTGAACATTCACCAGCGATATGGAAAATATAGCCAAGTATCTATCCGTTTTTCCCGAGTCACGA
TTCAACAGCGGACGTCTTAGTAGAACCATAACGCAACGACGGGTCGAGAGCAGTTCCCAGATTCCATGACAGGACGGTGACGCTGGTACAAAATATGCAA
ATCCCCACTAAAACTTATTCAGCTCTTGGACACTTCCGAATGACTGACTGACTGGTATAAGATGACGGTGCTAGACAGAGTCTGCCTTGGTGTAGATCCG
TACGGCGACGGCCAGGCCCAGTATCGCGAGGGGGACCAAGAACTGGAGGATCTTGATGACGAACTCGGGGGTCTTGTCCTGGTTGTAGTGCGGCTGCTTG
GGCGGCGTGTACTTGACCTTGGTGGGTATCGTGGTCGCGTCGATCTCGCCGACGTAGTACTCGTCCATCATCGCCCGGGCGGTTGTGCTGTGTCCCACGT
CCTCGAAGTCGTCGGTCGCGTCCTTGGCAGTTGAAGACAGCAAGACGTCGTCGCCTCCAGGGTGGTCATCAAGAAACTTGGTCACATTGTACACCTTGCC
GCCGATGACGAGCCAGCAGTCGTCCTTGGAGCTGTGCTTGGCGACCTCCTCCAGGGTGAAGAGCTTGCCACCGGACGACGACATGGTCTCCTCCTCCTCC
TCCTCCTCCTCCTCTCTCTGCTTCCAAGGAGTCAAGCGAGAGTGATGGGAAGGGTTTGGATCCAAGGGGCCTCGTGC
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