Home About update informationSite map Contact Us
Japanese | English  
Genome / Development
cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig6827  (registered. 2012)
Contig Information
Length 797 bp
Clones alternative view 115 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 8
Wh_dL Crown of seedling 1
Wh_e Seed DPA10 2
Wh_f Spike at flowering date 2
Wh_h Spike at heading date 2
Wh_oh Pistil at heading date 6
Wh_r Root 2
Wh_DPA20 Seed DPA20 3
Wh_EM Dormant seed with water absorption 5
Wh_EMI Dormant seed with water absorption after breaking 14
Wh_KMV Shoot grown with continuous light after cold treatment 1
Wh_MS Seed DPA5 of DT3DL CS wheat 2
Wh_OKCS Seed DPA5 10
Wh_SHC Shoot grown with cold treatment 3
Wh_V483 Shoot grown under cold condition for 3days 2
Wh_VSCB Liquid cultured tissue 2
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 1
WH_XN Leaves, plant was grown at constant 23℃ 5
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23℃ ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 2
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_XT Roots, 18 day old plants were grown hydroponically 2
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 1
WH_SP 2
WH_XA Root 6
WH_XB Root 15
WH_XC Root, treated at 50 microM Al for 6h 8
WH_XD Root, treated at 50 microM Al for 6h 1
WH_XE Seedling, infected with leaf rust 2
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115474029|ref|NP_001060613.1|| Os07g0674200 [Oryza sativa (japonica cultivar-group)]
Score 236
Evalue 2.00E-60
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig6827 
TTTTTTTTTTCAGGAGTGAAAAGCACCACCGTTTTACACAGCAGTTCACATGAAAACAAGAACAAATCTCCATATTACTTGTCTAGGTTCAGAGACATAT
GGATCCATAGTCGGGGAGACAAAATATAAGGATTCTTCAAATTAAACCATCCAGGTTCAACGGGGCACAACATAAGATAGGTGGATAACTAGGAGGTACT
CAGATCAAGTATCAAAACTCAACAAGCACTACAATATAACAATGCACTCTAATCCTCCTCCTCGCCCTCATTCTCAGCGATGTTGAAGTACCGGAGCTCG
TACACGTTGCGCTCCTTGTTGGCTGCGATCACACGAAGCCAGTCCCGCACGTTGTGCTTCTTCAAGTACTTCTTGGTCAAGTACTTGAGGTACCTCTTGG
AGAAGGCGCCGTCGGAGGTGACGGTGACCTTGCTCTTGTCGCGCGTGACGGTGACGGAGTCGCCGAGGTTCCCGGCCTTGCCGCCGGCGACCTTGATGCG
CTCCTGGAGGAACTTCTCCAGCGACGCGATCTCCATGATCTTGTCCTCCACGGGCTTGGTGCAGTCGATCACGAAGGAGACGGACCCCTTCTTCTTGCCC
TTCGCGGCCGCTGCCGCCGCCGCCGCGCCGCGAGCCATCTCACCTTCTCTTCCTCCTCGGCCGGCGCTCGCTCGGGTTGGGTGGGGGTTCGTGTGGCGGC
GCGCCCTCGTGCCGAATTCGGCACGAGGCAACATCGTCATTTCTCTTCCAGCACCAGAGTAATCTTCGGTAGCTCGTTGTAGCAGCATCCTTCCCGG
page-top