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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig17440  (registered. 2007)
Contig Information
Length 1031 bp
Clones 5 Clones [Download: TSV  ,  FASTA ]
Wh_EMC Dormant seed with cold treatment after water absorption 3
Wh_OKCS Seed DPA5 1
Wh_SHC Shoot grown with cold treatment 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os05g0267800 [Oryza sativa (japonica cultivar-group)] >gi|54291801|gb|AAV32170.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|113578598|dbj|BAF16961.1| Os05g0267800 [Oryza sativa (japonica cultivar-group)] >gi|215692374|dbj|BAG87794.1| unnamed protein product [Oryza sativa Japonica Group]
Score 578
Evalue 3.16251e-78
Total Hit Count 472
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig17440 
AGATGGATGGACGCGACGTGACAACGTGCGCCTTCATGTTTTAGTGTATATAAGTAGATCTTTACCCTGTTCTTGTGCTTTAGCTAAGCTCATGTATGAC
TCACAAGTAACTTGTATTTAGTCAGAGCCATTGGCCAGGGAGATATTTTTCTAAACTATTGGTCAGGGAGATCAGTTGTGGTTGTGGCCATTTGAATCTT
TTGATGCTCCTCTCATCTTGCTCGGCTCTTCTCATTCTCTCGGCATACTTGTTGATGTCGAAGGCCGTACGGGTGCTTCTTCCTCCAAATGAAGACTCCA
GCGTATCCAAGTCAAAGATGTCAGCGATTGTCTTGAGGCTCTCCGGCTTGTTAGCATATACAAACTTCACTTTCTCTTTCATGTCTGCCTGCACGAAGTT
CTTGGCTATCTTCCAAAAAGATTCAAAAATCCTGGGAGGGTCGAAAGGAATCGCCACGCCTATCACCCCCGGATAATAGTTTTGGATTATGTGTATGGAT
TCGCGGGTTATCGACAGCGGCGTGCTCGATATCGACCAGCCCCGGAAGTCGGTCAGCCAAACGACGAAGTCGTCTTGTTCATCCGCTGAGTTGGTGGCGA
AATACTCTAGGAGATACACCAGGTGCTTTATCTGCTCCTTGGCTGAAACTTTAGACTTCATTGGTACGTTTGATACGAGGACACTTCTTCCATTCTTATC
AAGGTAGTCGGCCACATGTGTCCTCCTGACCTCGTTCTCCATTTCTGCAACGTCGTCCTGCCATTTAATTTGTGGGCAACGGAGAAGAGAAGAGCGTTGT
TTACACAATCCATCCAAGGCACCTACATATGAGCAGATATTTTGAGACAAAGTACTCCATAAGGCTAGAATTTCAACTGACCCAGGAAATTGCATCCGGC
CTGTAGTCACGCCTCCACTTGACAGTCTCCTTGAGACCCTTGGTTGCTTGCTCCATGCTCCAATTCCTCGCCCTGAGGAAACGGCGGATGGTGGCGTCTG
ACATAAAACTCGGCATCTCCTCCGTCAGACT
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