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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig11007  (registered. 2012)
Contig Information
Length 875 bp
Clones alternative view 93 Clones [Download: TSV  ,  FASTA ]
Wh_dL Crown of seedling 4
Wh_e Seed DPA10 4
Wh_oh Pistil at heading date 2
Wh_r Root 1
Wh_yd Spikelet at late flowering 7
Wh_CSEC Callus 2
Wh_EMI Dormant seed with water absorption after breaking 3
Wh_KMP Shoot grown under continuous light 2
Wh_OKCS Seed DPA5 1
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 2
Wh_SHDr Shoot grown with dessication 2
Wh_VSCB Liquid cultured tissue 5
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 4
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 4
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23℃ ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 2
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 6
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_SP 1
WH_XA Root 4
WH_XB Root 12
WH_XC Root, treated at 50 microM Al for 6h 11
WH_XD Root, treated at 50 microM Al for 6h 6
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115457956|ref|NP_001052578.1|| Os04g0376000 [Oryza sativa (japonica cultivar-group)]
Score 217
Evalue 1.00E-54
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig11007 
GAAAACTAATTTTATTCAAAAAAAGGGTGTATCCAGAAGATGTTATTCCACTAGTCCTTCCCTGACTAAAAGCTTAATATGGCAAGCGGATGGATCAGAG
AAGGAAACGGATGCAGAACATCAAGCATCCACCACCTGGACAATCAGATGGCCTACATCCACAATCAGATGGAACTGCAAACTAACAAGGCACGATAACC
ATCACACTAGAACATCAACTAGCAGCCACTAGCACAATCAGATGAACTGGAAACTAACAAAGTACAATAACCATCACACTGCAGCACCAACAAGCAGCTA
TAGATAATAGTGTTAACAAGCAAAAGTTCGAATTTCATGCAGGATATCGAATACATTGTACTTAGATAGCAGCGGTGTCCACACAGAACATAAAATTCAT
GCAACTTCTGGGCAAAACTCGGCCGGCAAATCATTCACTCCTAACCTAGGCCTTGATAGCATACTTCCTGATGGGGAAGTACTTCTCACGCTTCTTCTCC
CTCTCGGTCTTCAAGGAGAGCTGGTGCTTTGTGAGACGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAGGTCGAGCGGGAGCCGCTTGTTCTTGTACG
CCTCCCTCAGCGCCGACTTCTGCTTCTGCGAGATCACCGTGAGCACCCTCGCAATCGAGGTGCGCACCACCTTGATCTTCGACAGCTTGTTGGGGGCGCC
GCCGGTGACCTTGGCGACGCGGAGGAGGGAGAGCTCCGCCTTGAGGTCCTTGAGCTGGCCCTGCAGATCCGCCTTGTTCTTCCCCCTCAGCTCGTGCACC
TTGATCCGGGCCATTGCTGCTGGCGAGCTGGTCTAGCGGCGGGAGCGGCGGCGGCGGCGGGCGGGAGGGTGAAAA
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