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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig6927  (registered. 2012)
Contig Information
Length 1552 bp
Clones alternative view 128 Clones [Download: TSV  ,  FASTA ]
Wh_f Spike at flowering date 1
Wh_h Spike at heading date 6
Wh_SH - 5
Wh_KMP Shoot grown under continuous light 4
Wh_KMV Shoot grown with continuous light after cold treatment 1
Wh_OKCS Seed DPA5 2
Wh_SHDr Shoot grown with dessication 2
Wh_V4816 Shoot grown under cold condition for 16days 10
Wh_V483 Shoot grown under cold condition for 3days 17
Wh_VABA Shoot with ABA treatment 3
Wh_VHS Shoot with heat shock treatment 15
Wh_VWD Shoot grown with dessication 8
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 1
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 6
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 2
WH_XN Leaves, plant was grown at constant 23Ž 7
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 4
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 7
WH_XE Seedling, infected with leaf rust 10
WH_XF Seedling, infected with leaf rust 4
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 5
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 1
WH_XV Leaves, plant was grown at constant 23Ž 2
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 5
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115488340|ref|NP_001066657.1|| Os12g0420200 [Oryza sativa (japonica cultivar-group)]
Score 688
Evalue 0
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig6927 
TTTTTTTTTTAAACGGAATATTTCAATCTATTAGGTTCAGTTTTTCAAATCTTTAGTGATCAAATTCAGGTTCCGTTCTTAGAAAACTGATATTGTTATA
AACAGTATAAACTGAACCGAAATACACCGAATGCCACGAGAGAATTAGGCGTCAGCAGTACATTTCATCGGATGAGTGAACCTCAACCTATATCCCAAAA
CTGAGATCGTCTTCCCTGTGCTACATATGCACACCGCACACGCAGTTGCCACACGCTTTGCGCTGCCATGAGCCATGTGCCCAACCATGCACGCCTCAGG
TCGGCTCACACGCTCACGAGCTTCTTGCCGAGGATCATGTCGTCCGTGGTGAAGTCGGCCTCCTTCCTGAAGGTCCCGCGGCCGAAGTCAAGGTTGTACG
AGTCCGTCAAGCCGTCGAGGAGGTCGTACTCCGGCGTAACCCCGAGGTCCTTGCTGGCCTTCTCCACCGACGCGAAGAAATGCTGGTCTCTGAAGGGGAA
GGCCTTCTTCTTGCCGAAATCGAAGTCCTTGGGGTTGTAGTGGATGATCTCCGGCTCAGGGAACCCTCCAGCCTTAGCGCATGCCCGTGCTAGCCCGTCG
AAGGTGACGTACTTGCTGCCGGAGATGTTGTACACCTGCTTGCTCGCCTTGGGGTTGCCGAGGACCTTGATGAACGCCGTCGCCAAATCCTTGACGTGGC
CGAGCTGGGTGATCTGGTTCCCAGCGTTAGGGATGGGGATCGGGCGACCAGCCTTGAGCCGGTGGAAGAACCACTCCTCCACGGGGTTGTAGTTGAGAGG
GCCGTAGATGTAGACCGGCCTGATGGACGTCCAGTTCACGCCGCTCGTCTCTAGAAGGCTCTCTGTCTCCAGCTTTCCCTTATGCCGGCTTTTCGGGTCC
ACGGCGTCGGTCTCAAAGTGTGGGAGCAGGTCTGATTTAAGGTAGACTCCTGCCGATGAGCAATAGATAAACTGTTCCAGGTTCGGCAACGCTTCTAGTA
TGGGGGATACTTCGGTGGCCTCACGCCCATTAATATCATAGACGACATTGAAGCCCTTAGCAGAAAGGCTGGTCTTGACGAAATCAAAGTCTTTCCTATC
ACCTTTCAAATGCAGCACCTTGGAAGAGAACTCTGCATACTCTGCATCTGATTCACCTGGCAACTGCTGGGTTATGGGTGCCTTTCCTCTGGTGAACAAT
GTGACCTGGTGTCCCTCCTGGACAAGTTTCCTGGAGAGGAAGAGACCGATGAACCTGGTGCCCCCCATGATCAGAATGTTCTTGGAGTCTGCAGCTGCTG
CCACCTGCATTCTCGCCCCCCTTGGCTGCCATGACCTTCTCCTATTCTGGGCTGAGATGGAGATGGCTGCGCCGCCGAAGTCGGAAAGAGGGGAAGATAG
GAAGAGGCTGCTCTTCAGGGAGACACTCGCCGCCGCCATTTCTCTTCCCTTCTGTCTCCCCTCTCCCTGAGCTTGTGCTACTAAAAAGATGAAGTGCAAA
CAAGAGGAGAGGGCTTTGTTTGCCTGTCCAGGATGGCGGCGGCACGAGGCCT
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