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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig187  (registered. 2012)
Contig Information
Length 894 bp
Clones alternative view 51 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 1
Wh_dL Crown of seedling 2
Wh_e Seed DPA10 3
Wh_f Spike at flowering date 2
Wh_r Root 2
Wh_CSEC Callus 4
Wh_KMV Shoot grown with continuous light after cold treatment 4
Wh_OKCS Seed DPA5 6
Wh_PCDAM Anther at meiosis 2
Wh_VSCB Liquid cultured tissue 2
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 2
WH_XR Roots, 18 day old plants were grown hydroponically 2
WH_XA Root 4
WH_XB Root 6
WH_XC Root, treated at 50 microM Al for 6h 2
WH_XD Root, treated at 50 microM Al for 6h 3
WH_XF Seedling, infected with leaf rust 2
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27℃ ) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115470251|ref|NP_001058724.1|| Os07g0109500 [Oryza sativa (japonica cultivar-group)]
Score 393
Evalue 1.00E-107
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig187 
GCCGCCGCCACCCACGACCACCACCGGAGCCGGAGGAAGAGAGGAAGGGAGAAGCCAACAGGTAACGATGGTGTCCGGCTCCGGTGTGTCCGCGCGTCGC
GTGGTGGTGGATGCGCGCCACCACATGCTGGGTCGCCTTGCGTCGATCGTGGCCAAGGAGCTGCTCAACGGGCAGCGCGTGGTGGTGGTCCGGTGCGAGG
AGATGTGCATCTCCGGCGGGCTGGTCCGTCAGAAGATGAAGTACCTCCGCTTCCTCCGCAAGCGGATGAACACCAAGCCCTCGCACGGCCCCATCCACTT
CCGCGCCCCCTCGCGCATTTTCTGGCGCACCGTGCGCGGCATGATCCCGCACAAGACGCCCCGCGGCGAGGCTGCGCTCGCCAGGCTCAAGGCGTTCGAG
GGCGTCCCGCCGCCTTACGATCGCACCAAGCGTATGGTCATCCCCGACGCGCTCAAGGTTCTGAGGCTGCAGCCGGGGCACAGGTACTGTCTGCTCGGCG
AGCTTTCCAAGGAGGTCGGATGGAACTACCATGAAACTATCAAGGAACTGGAGGAGAAGAGAAAGGAGAAGGCTAAGGTGTCGTACGACAGGAGGAAGCA
ACTGGCCAAGCTGCGCGTCAAGGCTGAGAAGGCTGCCGAGGAGAAGCTGGGTTCTCAGTTGGACATCCTGGCACCAATCAAATACTAGTGTGCCCCGCAG
TCATGCATCGTCTGTTTTGCTGGATAATGGTGGTTATTGTTTACGTTATTAGTAGCCTGAGAGTGTCGTTGAGATTTGAAACCTCTGAATATCTATACTC
TTCCAATCTTTGTAGCAAATGGATTGTTTGGTATTGTTGTTTTCGCCCCATGAGATTTCCTAGATGTTGCTGTTTTCTCCCATCAAAAAAAAAA
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