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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig6540  (registered. 2012)
Contig Information
Length 3960 bp
Clones alternative view 653 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 5
Wh_dL Crown of seedling 4
Wh_e Seed DPA10 5
Wh_f Spike at flowering date 5
Wh_h Spike at heading date 6
Wh_oh Pistil at heading date 1
Wh_r Root 17
Wh_yd Spikelet at late flowering 4
Wh_CSEC Callus 2
Wh_DPA20 Seed DPA20 58
Wh_EM Dormant seed with water absorption 6
Wh_EMI Dormant seed with water absorption after breaking 5
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 15
Wh_KMP Shoot grown under continuous light 4
Wh_KMV Shoot grown with continuous light after cold treatment 4
Wh_MS Seed DPA5 of DT3DL CS wheat 1
Wh_OKCS Seed DPA5 1
Wh_PCDAM Anther at meiosis 21
Wh_RDr Root of dessiccated seed 25
Wh_SHC Shoot grown with cold treatment 2
Wh_SHDr Shoot grown with dessication 10
Wh_V4816 Shoot grown under cold condition for 16days 8
Wh_V483 Shoot grown under cold condition for 3days 5
Wh_VABA Shoot with ABA treatment 2
Wh_VHS Shoot with heat shock treatment 21
Wh_VSCB Liquid cultured tissue 2
Wh_VWD Shoot grown with dessication 6
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 12
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 5
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 4
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 9
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 1
WH_XN Leaves, plant was grown at constant 23Ž 48
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 19
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 14
WH_XQ Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 10
WH_XR Roots, 18 day old plants were grown hydroponically 3
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 11
WH_XT Roots, 18 day old plants were grown hydroponically 8
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 9
WH_XA Root 10
WH_XB Root 6
WH_XC Root, treated at 50 microM Al for 6h 10
WH_XD Root, treated at 50 microM Al for 6h 25
WH_XE Seedling, infected with leaf rust 56
WH_XF Seedling, infected with leaf rust 42
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 60
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 20
WH_XV Leaves, plant was grown at constant 23Ž 8
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 5
WH_XX Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 11
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 1
WH_F/WH_R 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|189311142|gb|ACD87749.1|| glycerol kinase [Candidatus Liberibacter americanus]
Score 162
Evalue 1.00E-41
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig6540 
ATGGGAATGGGGAGGCAGTGGGGGCCGTGGGGGGTACAGAGGATACAGGAGAAGGTGGCATTTGAGGAGAATATATACAGTACATGAGGGATTTAGAAGC
AAGCATGCTTCCCTCCTACAGGAAGCATGATAACTTCACACTGTTTCACACACCAGGATCGTCATCATCAGAAGATTACGCGGTGGCAGCTGCCCTCGTG
CCGGTTCTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTAT
TGGCATAACAACCGGTACACCATAGGTTGACCCAGCCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGA
ACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAG
TCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTC
CACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAAT
CAACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATGAT
CGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTT
GTCACTGCGAAGCTATAGTCAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGG
AGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACC
GGGGCTTCCATTCAAAGCTTATCACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTG
TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCG
AGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCC
CAATTCGAAGTTTTTTCCTGGAAGTTTCAACCGTCGTTGACTATGACAACAGTCGCGACCGACTATTAAGATCCTCGCGACTATGGCAGGGCGGTACGCT
CTGCTCTCTCGCGACCTCCACTCTAATCAAAAGACTAAAGGCCCCTACGGAAGATGAAAAAGGCGAGGACTGAAATGAGAAAGGAAGGAGTTCGGCAAGA
CGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTC
TTTTTCTTCGCCTTTAGAGAGAAATCCGTGTCCGCCCCAGCAAGAAAACGTATGCGCGTGTACGGAAGCGCAACGGCTTTCGCGCTCATCCCTTGCTTCA
AAACTACAGGTTTTAGCCCTCCGTTTGCTGGTCGCCAAAGACGAGAGCTTCGCCTTTGGAAGCGCCAGTAGCGTAGGGCGACCGGGCCAGCCGAGCCCCT
CTGAATTAGTTGACGGCTTTGATGACTCGACGGTGAATATTAAGGAAAGGAGAGCGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTC
CGACGATCCAGGCATGGTTCAGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTCTCACTTCTGATAT
CTCCAGGTCTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTCCCGCTACTGACACTTGAAAAAGCTGCTTTCAAGGTCTCGTCGCTTCGGTGAATCA
CTTGAGCCCTGAGACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCA
TCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTTTGGATCTTAGCACCCAATCAG
TCTGTCTGTACTAAGGATGACGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAAGCGAAATGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGC
CATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATT
TTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTCAAATAGGAAGAACGTA
AATCTTCCACCTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTCCTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGT
GCGCCCGCGCTCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTCTTTTCACCTTTCCCTCACGGTAC
TTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCGCGTAAAAGCGATCATCATTCGAACACGCCGCGTTTTACTGGG
AAGGATCGAACCATGGGAACGAATGAACAGGGCTATCACCTTCTTTGGCCGGATCTTCCAATCTTTTTAGAAAACCAGTTCACTGCGCGCCCCACCCCGT
CATCAGTCCTGTGTTGCCTATGCTTGCGCCCCAAAACGGTTGCTGACTTTGTACAACTCCGTAGGGCGCGCTACGGCAACTTTTCTAACTACGCTTGCTG
CTTGCTGGTTTTTCCATCATCCAATCCACAACAAATCGAATGAAACCGCTTCGGATTTCTTTTGATGAAAACCCTTGTTCCGCTCTCGCTCGCCGCTACT
AACGGGGTCTCGGTTGATTTTCCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGA
TACGGTTTCCCGATCGGAGATCCATGGATCACAGAAAAATCTCTCCCCATGGCCTTTCGCCTCTGAAAGCGAAGAACAGGAGCTGAGGAGAGGATGCACT
AAATGTTATGCAAGAATCAAAATACCTATATAACCTTGCTTGCTCATCCCTGTATCATATTCTCTGTCCTAAGTCTAAGTCTGTATCTCCTGATCAGTGA
AGTCATTTTGGTTTGTGATCTTCTCTTTTCCAGTCAGTCAGTCCCAAGTCTCATCTTGTTATATACATAAGAAAGAAGAATCCAAGAACATGTGAGATGT
ATCTGTACCTGTCTGCCACATAATTGTGTCTTCTCCTTTTTGCTCTGTTTGTTCTTCCTTTTTTTTCTCTTATGTCTCTTCTTGGCACAAAATGCAAAGA
CACCATATTTTTCCTCTTGCGGTTTGTCCATCAAAAGTTGTTTTATTATCAGCATGGTGT
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