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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig16645  (registered. 2012)
Contig Information
Length 1177 bp
Clones alternative view 296 Clones [Download: TSV  ,  FASTA ]
Wh_SL Seed DPA30 14
Wh_e Seed DPA10 2
Wh_f Spike at flowering date 2
Wh_h Spike at heading date 5
Wh_r Root 1
Wh_yd Spikelet at late flowering 4
Wh_CSEC Callus 44
Wh_DPA20 Seed DPA20 5
Wh_EM Dormant seed with water absorption 11
Wh_EMI Dormant seed with water absorption after breaking 17
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 2
Wh_KMV Shoot grown with continuous light after cold treatment 3
Wh_PCDAM Anther at meiosis 4
Wh_RDr Root of dessiccated seed 2
Wh_SHDr Shoot grown with dessication 2
Wh_V4816 Shoot grown under cold condition for 16days 4
Wh_V483 Shoot grown under cold condition for 3days 1
Wh_VSCB Liquid cultured tissue 17
WH_XI Two-week old seedlingsi22Ž 16L-8Dj 4
WH_XJ Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 3
WH_XK Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 4
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 6
WH_XN Leaves, plant was grown at constant 23Ž 15
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 1
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 24
WH_XR Roots, 18 day old plants were grown hydroponically 6
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 4
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 7
WH_SP 1
WH_XA Root 8
WH_XB Root 3
WH_XC Root, treated at 50 microM Al for 6h 8
WH_XD Root, treated at 50 microM Al for 6h 5
WH_XE Seedling, infected with leaf rust 2
WH_XF Seedling, infected with leaf rust 1
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 21
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 16
WH_XV Leaves, plant was grown at constant 23Ž 8
WH_XX Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 5
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115468934|ref|NP_001058066.1|| Os06g0612800 [Oryza sativa (japonica cultivar-group)]
Score 290
Evalue 3.00E-76
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig16645 
AGACACCATCTCACAACCAACCTCACAGAAGAATTCCACCAACATCTCACCTGACACTGAACTTCTATCTTATGGTGGAGATAGCCCAGCTGCACAGGTG
TGATGTAAATTTTCTCAGGGGCCAACTGGTCTGACTATCATCAGGAAGAAAGAAACTACTGACAAGGGCGAATGACCATGGGTACCATAATAACAGACGA
CGACGCTTACTCGATACCATTACCGGTTGCGACTGTAAGACAGACAGACAAACATCAGGAGGAAAGAGCAGTACATTACAGAGTGCTAGCCAAAATGCGA
AAGCCACAATACCGTTACCGTTCCGCCGCGCAGAGAGACGACCATAAATAAAGCTTACACAACATAGCCAACAAGGAGACCGTTCGGACCTGGGGCTGCC
GCCGTGGCGCGTGTGCCATGCATCACGATTGCCCAACAACTAGGATTGCAGAAGCCAACATGATGAAAGGATAATGCAGCAAAGACGCACGATGACGAGG
TAGCGCAGATTTGATTTGGGACCTTATGTTCTGCCGACCGTAGGGAGGCCCCTTCCTAGATCTTGTCGAGCTTCTCCGCCTTCACCACCGGGTTGGCCTT
GGCGATGGCGTCCATGGCCGCGGCGCGGTAGTCAAACTTGCACTCGTGCTTGTCCGAGTAACGGTGCGTCGCGCAGTACAAGTTCCCGCACCGGCAGTTG
AATCCGGTCAGCCCAACCCTCTTTCTGCAGGTGCTGCACCGGCTTGGGCCTTTGGGGTTCTCCATCGCCGCCTCGCTGGGACCGGCGATATCAGCAGGCT
GTGCGGTAATAAGCGTCTTCGCCTCAACGTGAGCAACTGCCACCGCCGTGCTGCCAGCAGCAAGGTGTTCTTTCGCGGCATCGCCACCGTTGACGATGCT
GTCGAAAGAGGAGGCAGCCAGCTTGGCCTGCTCCTGCTTCATCGCCATCTCCTTGTGGCACTTGGAGCACATGTTCATGGTCGCCGCACTGCCAAAGAAT
CCGCAGTTATTGACGCAAAGGATGGGACCCTCCCGAGACTGGCAGCCGGTCTCCTTGTGCTCCATGGCTTTGATTTAACTGATAGGAGGAAGCCCTCGTC
GCGATTCCTCTCCGGCGATCCCCTAGGAGGGGGAGGACGAGGAGGCGAGGGGAGAGGAATCGCGAGGAATTCGGTGG
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