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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig6366  (registered. 2012)
Contig Information
Length 1009 bp
Clones alternative view 78 Clones [Download: TSV  ,  FASTA ]
Wh_h Spike at heading date 4
Wh_yd Spikelet at late flowering 2
Wh_DPA20 Seed DPA20 3
Wh_EMI Dormant seed with water absorption after breaking 2
Wh_SHDr Shoot grown with dessication 6
Wh_VABA Shoot with ABA treatment 5
Wh_VSCB Liquid cultured tissue 2
WH_XN Leaves, plant was grown at constant 23℃ 2
WH_XO Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 3
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23℃ ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 1
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_XT Roots, 18 day old plants were grown hydroponically 2
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_SP 4
WH_XA Root 7
WH_XB Root 2
WH_XC Root, treated at 50 microM Al for 6h 4
WH_XD Root, treated at 50 microM Al for 6h 4
WH_XE Seedling, infected with leaf rust 5
WH_XF Seedling, infected with leaf rust 4
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 2
WH_XH Seedling, infected with powdery mildew (AvrPm3b) 6
WH_XW Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115475275|ref|NP_001061234.1|| Os08g0205400 [Oryza sativa (japonica cultivar-group)]
Score 140
Evalue 2.00E-31
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig6366 
CACGATAACACCTAAAGCTTGGTAGCAGTAGATACTTTCCCAGGCAATGGAAGCACAAGCCAAAGGTTCGATTATGGTATCGGAGGAAGCTGGCACAGGC
CTGTCCTCACGCGTCATGGACATGGCCCAGGCACCATCGTGCCGCTAAGCACCACCATCCTGCGTCGAGCAGCGCGACTTTGCAGCAAAGACCTCACAGC
CAAGGCGGTAGTCGGGAGGCACAGTAATGGCGGAGGGCAAGCCCACCCGGCGAGTGTTGACGAGGAGGGGAGACCACCACACGCTCCCTGCCGGGAGAGG
AATTGCAATTCAATTTCTTCCCCGAATTATCACAGATTTACAGCGCAGGAATGCCAACTTTTTTTTTTGCACAAACAAATTACCAGTTTGCTATTATTTG
CAGTAAATTCATGGTGCACATACCACCGTCCCACCAGAAAATCATGTCCTTGCAAAGCATTTCAACTGGGCCATTGCTACATCAAACCTCACAGTTTACA
TATTATAGAGGTGCCTTTTTAGGACGAAACAGCAGATGCCGGTGAGGGTTCAGCCTCCCAGAACGCCGTCTTCTTGCCTGTCTTCGAAACAGTCTGCAGA
ACAGCATCCGGCGTCACATTACCCTTCACAGTGACCTTCTGCTCCTTGATGTCTACATCGAAGGACTCAACACCTTCCATTTTGCCAAGAACCCGCTTAA
CAGCTCCAACACATCCCTCACATGACATGCCAACCCTGAGTTCAACAGTCTGAGACATTGCGTGCGAGATCGGCTGATCCGCGGACGGCGAGGGTAGGGC
GCGGGGGGGAAAGGCAACGTGCCGCGAGTCGGAGGGGTTGGAGGATGATGGGAGAAGGAACTGCCGGGAGAGGGGTGAATAAATGCGTACGGAGGTCAGA
GCGGTGGCGTGCAAGTGATTGCTTTGATTTTTGTGGCGAGGGTGGACGCGGCTTTCGTCTGGTTGGGTTGACAGGCGGGGACACGGCGTAGCGTGCACGC
TGTTGGACC
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