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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_V483_all.Contig1666
Contig Information
Length 1155 bp
Tissue Shoot grown under cold condition for 3days
Clones 23 Clones [Download: CSV  ,  FASTA ]
whv3n5i19    whv3n10j09    whv3n11c02    whv3n14a14    whv3n14b01    whv3n14e02    whv3n14h13    whv3n14h14    whv3n15k05    whv3n15m17    whv3n16e24    rwhv3n5i19    rwhv3n10j09    rwhv3n11c02    rwhv3n11h14    rwhv3n14a14    rwhv3n14h13    rwhv3n14h14    rwhv3n15k05    rwhv3n15k06    rwhv3n15m17    rwhv3n16e24    rwhv3n19h11   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|113535731|dbj|BAF08114.1| Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group] >gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_005582 [Oryza sativa (japonica cultivar-group)] >gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1080
Evalue 1.04948e-115
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_V483_all.Contig1666 
CGCACACACCACGCCTGCCTCATCTCTCGGAGCAGGAGGAGGAGCTTGCAGGAACAATGGCAGCCCAGGGTCTTCTCTCTGGGAGGCAGCTGCTGGGGAG
GCCTCTGCAGTCCTCCATCTCCAGGTCGTCTTCCTCCCGGAAGTCCCCCTTCGTCGTCAGGGCATCGTCCAGCCCCCCTGCCAAGCAAAATGACAACAGG
CAGCTGTGGTTCGCGTCCAAGCAGTCCCTCACCTACCTCGACGGCACGCTGCCCGGTGACTTTGGTTTCGACCCCTTGGGGCTGTCCGACCCGGAGGGCA
CCGGCGGGTTCATCGAGCCCAGGTGGCTGGCCTACGGCGAGATCTTCAACGGCCGGACGGCGATGATGGGGGTGGTGGGCATGATCGCCCCGGAGGCCCT
GGGCAAGGTGGGCCTGGTGCCCCCGGAGACGGCGATCCCGTGGTTCCAGGCAGGCGCGATCCCGCCGGCGGGCACCTACCAGTACTGGGCCGACCCATAC
ACGCTCTTCGTGTTCGAGATGGCGCTCATCGGCTTCGCGGAGCACCGGCGGCTCCAGGACTGGTACAACCCGGGCTCCATGGGGAAGCAGTACTTCCTGG
GCCTTGAGAAGTACCTCGGCGGCTCCGGCGACCCCGCCTACCCCGGCGGGCCCATCTTCAACCCGCTCGGGTTCGGGACCAAGAGCGAGAAGGAGATGAA
GGAGCTCAAGCTCAAGGAGATCAAGAACGGCCGCCTCGCCATGCTCGCCTTCCTCGGCATGTCCCTGCAGGCCATCTTCACCGGCGTCGGGCCCTTCCAG
AACCTCCTCGACCACCTCTCAGACCCCGTCAACAACAACATCCTCACCAGCCTCAAGTTCCACTAGGCGAAATCGATCCGATCCGATCCGAGCATCGTCG
TCCTGTGCATGGTACCCGTCGTCGTGGGAAACGTGAGCGTGCGAGAGGTATATATGCGAGGGTGGGTGTAAAATGTAAATTTGTACGCGTGCTGCGTGCA
TGCTTGTAATATTTATATCGTGCTACGAAAATTAGTGCATTGCATCTCTCGTCATCTTCATCAACATCTGTGTCTTTCTTTCCCCGCTCCTCTTCTGGTT
ATCGTACGTGCAATTAGGCGGCTAGGTTTTGACGATAGTGGCCGTATCTTCTTAA
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