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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig23904  (registered. 2003)
Contig Information
Length 1829 bp
Clones 21 Clones [Download: TSV  ,  FASTA ]
Wh_SHC Shoot grown with cold treatment 2
Wh_SHDr Shoot grown with dessication 4
Wh_V483 Shoot grown under cold condition for 3days 4
Wh_VABA Shoot with ABA treatment 3
Wh_VHS Shoot with heat shock treatment 3
Wh_VWD Shoot grown with dessication 5
Homology (BLAST) Top Hit putative SHOOT1 protein [Oryza sativa Japonica Group] >gi|50509751|dbj|BAD31803.1| putative SHOOT1 protein [Oryza sativa Japonica Group] >gi|125557384|gb|EAZ02920.1| hypothetical protein OsI_25059 [Oryza sativa Indica Group] >gi|125599267|gb|EAZ38843.1| hypothetical protein OsJ_022326 [Oryza sativa (japonica cultivar-group)] >gi|215692785|dbj|BAG88226.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1237
Evalue 1.21582e-133
Total Hit Count 469
Registered year 2003
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig23904 
CATCGTCTCCTCCTCACCGCTTCCAACCCCTTACCGCAAAGATTCAATTCGCAGAGGAACCAAGAGCCCAAAGCTCCCAGCTAGCTAGCTGAAATGGCTC
TCGCCCACCAGATCACCAACCAGCCGCTCCTCTCCTCCCCGCCGTGCCTCGCAAGAACCAACGGTAGCAATGCGCGGACGGCGAGGACGGCGTTTCTTGG
CCACAGCTGCTGCCTGAAGCTTCGGGATACGGCGATGAGATGCGTCGTCGTCCGCGCGTCTTCGTCAGCGCAGGCGGAGCCCAAGTCCGGAGGTGGGGAC
GGGGATGGAGGCCAGGAGCCGTACGAGGAGTACGAAGTGGAGATCCTGAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCG
AGGCCATCTTCCCCGGCTCATCCGCCGAGCAGACCGGCAAGTTCACCGTCGGCGACAAGGTTATTGCCACCAGCGCCGTCTTTGGAGAGGAAATCTGGCC
GGCGGCAGGGTACGGCCAGACCATGTACTGCATCCGCCAGAGAGTTGGCCCTCTCTACATGAAGATGCAGAAGAAATTTGGGAAATGGGATGGTGCTGCA
GAGCTCTCTGACAAGGAGGTCATCAGGGCTGAAAGGAACACCGGAAATGTCAGCACTAAACTCAGAGAGATTCAGATGCAAAATTACCAGAAGAAGATGG
AGCAGGAGATCCAAAGAGAAGATGACCTTCGCATGGGGCTAAAGCTGTACAAGGATGGAAAATACGAGGACGCGTTGGAGAAGTTCGAGTCGGTGCTGGG
GTCAAAACCAGAGATTGATGAAGCTTCCGTAGCCAGCTACAATGTCGCCTGCTGTTATTCGAAGCTCGACCGGATACAAGCTGGCCTTTCTGCACTTGAA
GAAGCGATGAAGGCAGGCTATGAAGACTTCAAGAGGATTCACACCGACCCGGATTTAGCAAACTTGAGGAACTCGGAGGAGTTCGCCACCCTACTAAACA
AGTACGATGAATCATTTATCAACGAGAACGCCATCAATGCTATCAAATCCATATTTGGATTCGGTAAGAAGTGATGACCTCCTATCGATTGCACACATCT
ACTTGGTCTTTTGCACACTTGGCCATACCGCCCAGCCTCCCCCCCCTGCTTTTAACCTTGGGAGATATCTCCAGGAATGTTTTTAGCCTTCCTTTGTACT
TCAACCATTCTATGAACATACACTTTGTACATAACAATGGCAATCCTCCATTCGGAAAGCAAAGGCTACAGGAAATATGTTACCATCGTGCTTGTAAGTT
GTGACGTACTAGCTATCGTGCTTGAAGTACCAATCGGGATGTGGATATATTTTCTGGTGAACACAAGAGCCAGCTTTTGACGGACAAAACACGTTTTACC
TTCTAAGTTGGGAGTCTTTGTTGAAGTGGTTCCTCACTCCATTTATCGCTCCAGAACTGGATGGTGCTCTCAGAATTTGCAATGCACAGACATGACTGTT
TGTAAGTCTGGAGTAGGTTGAGGTGGGTCTTCAACCTAAAGGAGCCCACCTTGTCTTGTGGGAGAGAAGAGGAGTAATGCACTTACCAAATAAGGTTAAA
CCAGGGCAGGTCATCTCTATTGAAGAATTTATGCAGATTCTTCATCACGAGAGCTTTATTATGATCAATTTCCAAGCCCCCCTGCAACTTTGGTTAACCG
ATTCATGGAAATATTATCTCAAACAGTGGCTTGAAGTAACTAGAATCAGAGCAAAGCAAGATAAGGCTGATCTGATCAACACTTGGATAGCACAAAACTT
GTAATTTTCTTCTATGTTTCACAAAGCTG
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