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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25372  (registered. 2007)
Contig Information
Length 1253 bp
Clones 193 Clones [Download: TSV  ,  FASTA ]
Wh_DPA20 Seed DPA20 2
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 1
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 2
Wh_KMP Shoot grown under continuous light 25
Wh_KMV Shoot grown with continuous light after cold treatment 16
Wh_OKCS Seed DPA5 6
Wh_PCDAM Anther at meiosis 4
Wh_SHDr Shoot grown with dessication 6
Wh_V4816 Shoot grown under cold condition for 16days 35
Wh_V483 Shoot grown under cold condition for 3days 23
Wh_VABA Shoot with ABA treatment 13
Wh_VHS Shoot with heat shock treatment 36
Wh_VWD Shoot grown with dessication 24
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|113535731|dbj|BAF08114.1| Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group] >gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_005582 [Oryza sativa (japonica cultivar-group)] >gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1080
Evalue 1.17973e-115
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25372 
TTTTTTTTTTGTAAATAACCATTTTATTCATGAGAATTATAAAGAAGATACGGCCACTATCGTCAAAACCTAGCCGCCTAATTGCACGTACGATAACCAG
AAGAGGAGCGGGGAAAGAAAGACACAGATGTTGATGAAGATGACGAGAGATGCAATGCACTAATTTTCGTAGCACGATATAAATATTACAAGGCATGGCA
CGCAGCACGCGCTACAAATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCACGGTTTCCCACGACGACGGGTACCATGCACAGGACG
ACGATGCTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGAGAGGTGGTCGAGGAGGTTCT
GGAAGGGCCCGACGCCGGTGAAGATGGCCTGCAGGGACATGCCGAGGAAGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTT
CATCTCCTTCTCGCTCTTGGTCCCGAACCCGAGCGGGTTGAAGATGGGCCCGCCGGGGTAGGCGGGGTCGCCGGAGCCGCCGAGGTACTTCTCAAGGCCC
AGGAAGTACTGCTTCCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGT
ATGGGTCGGCCCAGTACTGGTAGGTGCCCGCCGGCGGGATCGCGCCTGCCTGGAACCACGGGATCGCCGTCTCCGGGGGCACCAGGCCCACCTTGCCCAG
GGCCTCCGGGGCGATCATGCCCACCACCCCCATCATCGCCGTCCGGCCGTTGAAGATCTCGCCGTAGGCCAGCCACCTGGGCTCGATGAACCCGCCGGTG
CCCTCCGGGTCGGACAGCCCCAAGGGGTCGAAACCAAAGTCACCGGGCAGCGTGCCGTCGAGGTAGGTGAGGGACTGCTTGGACGCGAACCACAGCTGCC
TGTTGTCATTTTGCTTGGCAGGGGGGCTGGACGATGCCCTGACGACGAAGGGGGACTTCCGGGAGGAAGACGACCTGGAGATGGAGGACTGCAGAGGCCT
CCCCAGCAGCTGCCTCCCAGAGAGAAGACCCTGGGCTGCCATTGTTCCTGCGAAGCTCCTCCTCCTGCTCCGAGAGATGAGGCAGGCGTGGTGTGTGGTA
CAGACTGAGATGAAAGTGTTTGCTCCAAAACTCACCCACTGCTACAAAAGGAG
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