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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_V4816_all.Contig1796
Contig Information
Length 1027 bp
Tissue Shoot grown under cold condition for 16days
Clones 46 Clones [Download: CSV  ,  FASTA ]
whv16n2c18    whv16n2e14    whv16n2k22    whv16n3c24    whv16n3j06    whv16n4h10    whv16n4h17    whv16n5g09    whv16n5j02    whv16n6j10    whv16n8e22    whv16n8o08    whv16n10f18    whv16n12h16    whv16n12i10    whv16n12i21    whv16n14j11    whv16n14j12    whv16n15e20    whv16n16b23    whv16n16l16    whv16n17g19    whv16n17m21    whv16n18g14    whv16n18p17    rwhv16n1j20    rwhv16n2e14    rwhv16n2k22    rwhv16n3c24    rwhv16n3j06    rwhv16n4h10    rwhv16n4h17    rwhv16n5g09    rwhv16n5j02    rwhv16n6j10    rwhv16n8o08    rwhv16n10f18    rwhv16n12h16    rwhv16n12i21    rwhv16n14j12    rwhv16n15e20    rwhv16n16l16    rwhv16n17m21    rwhv16n18g14    rwhv16n18o02    rwhv16n18p17   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|122246902|sp|Q10HD0|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|152013384|sp|A2XJ35|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa (japonica cultivar-group)] >gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group] >gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_011145 [Oryza sativa (japonica cultivar-group)]
Score 1256
Evalue 3.43455e-136
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_V4816_all.Contig1796 
CACATCCACCAGTTCATCTCACTGAGCTCGCAGGCAGCCCTAGCCACCAGCGAAATGGCCGCGTCGGCGCTGCACCAGACGACCAGCTTCCTCGGCACCG
CCCCGCGGCGCGATGACCTCGTCCGCAGCGTCGGCGACTTCGGCGGCCGCATCACCATGCGCCGGACCGTCAAGAGCGCGCCCCAGAGCATCTGGTACGG
CCCTGACCGTCCCAAGTACCTGGGCCCGTTCTCCGAGCAGACCCCGTCGTACCTGACCGGCGAGTTCCCCGGCGACTACGGATGGGACACCGCCGGATTG
TCGGCTGACCCAGAGACCTTCGCCAAGAACCGGGAGCTGGAGGTGATCCACTCGCGGTGGGCGATGCTCGGCGCCCTGGGCTGCGTGTTCCCGGAGATCC
TGTCCAAGAACGGCATCAAGTTCGGCGAGGCCGTGTGGTTCAAGGCCGGCGCCCAGATCTTCTCCGAGGGCGGCCTCGACTACCTGGGCAACCCCAACCT
GGTGCACGCGCAGAGCATCCTGGCCATCTGGGCGGTTCAGGTGGTGCTCATGGGCTTCATTGAGGGTTACCGTGTTGGTGGCGGCCCCCTCGGCGAGGGC
CTCGACATCATCTACCCGGGCGGCGCCTTCGACCCGCTTGGCCTCGCCGACGACCCCGACACCGCCGCGGAGCTCAAGGTCAAGGAGCTCAAGAACGGCC
GCCTCGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCCATCGTCACCGGAAAGGGACCCGTTGAGAACCTCTTCGACCATGTCGCTGACCCGGTCAA
CAACAACGCGTGGGCCTTTGCCACCAACTTCGCCCCCGGAAGCTAAATGTGTTTAGCCATCCGTCCGTCCGTCCGTCCATCGGACGAGATATGCATGTGT
ACTTGTACGTCGTGGATCAACGTGTAGCTGCACGTACTTTGTGTGTTTATTTGTACCATGATCGAGCGAGCGAGAGGTCCTCTCTCTGGCTGTGCGCAAT
GTAAATTAATTAAGCCCAAAAAAAAAA
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