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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25419  (registered. 2007)
Contig Information
Length 1279 bp
Clones 464 Clones [Download: TSV  ,  FASTA ]
Wh_DPA20 Seed DPA20 2
Wh_KMP Shoot grown under continuous light 18
Wh_KMV Shoot grown with continuous light after cold treatment 16
Wh_SHDr Shoot grown with dessication 86
Wh_V4816 Shoot grown under cold condition for 16days 19
Wh_V483 Shoot grown under cold condition for 3days 8
Wh_VABA Shoot with ABA treatment 175
Wh_VHS Shoot with heat shock treatment 6
Wh_VWD Shoot grown with dessication 134
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os07g0529600 [Oryza sativa (japonica cultivar-group)] >gi|32352138|dbj|BAC78562.1| thiamine biosynthetic enzyme [Oryza sativa Japonica Group] >gi|113611377|dbj|BAF21755.1| Os07g0529600 [Oryza sativa (japonica cultivar-group)] >gi|215712225|dbj|BAG94352.1| unnamed protein product [Oryza sativa Japonica Group]
Score 323
Evalue 7.32381e-28
Total Hit Count 193
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25419 
CTGCCGTGAGGCAGAGCAGAGCAGAGCACATGGCGGGCAGGTGGCATGAACAAAATACGCTAACACAAGAAAACTAAAGATAAACATCGGAATTAAACAC
GAGTCTGACAAATCACAAAGACAAGCCCTCGTCCCTAAGCATCCTCCGTTTCACCGAACCATCTTATTGATTTTGCGCCCCCAAACACCAGCGTACGTAC
GCCTCTTGGTGTCCGTGGTTCATTGCTTTGCTTTAGGCGTCCACGATGTCGCCGTTGTTGGTCGCCGCCAGGATCATCTCCGGGTGCAGCGCCGGGGTCA
CGTTCTTGAGCGTCCCGTCGATGCCGTTCGGCCGGCCGAGGGCCTTGAGCGCCAGGTGCGCCGCCTTCTGGCCGGAGATCATCATGGCGCCGAAGGTCGG
GCCCATTCTCGGGGCGCCGTCGATCTCGGCGACCTCCATGCCGGTGACAATCATGCCGGGGACCACCTCGCCTTTATTATAAAGGCTCGCCAGAAGTACA
AAGCACCCCAAACATAATAAAATATTACATCAAGGTCTATGGACCACCGAACGAACTGTTCATACCGGAGCACAGTTGGCCCGATCTTATTGATGACTGC
CAGGAAGTCTTCATGCATATGAGATGCAGTCGTCGCCGTCGAAGCCCTTGAACCAGACACCAAATAATCTCGCCGACGTGTACACACACACGACAAGAAA
CCCCTAACCTCGCCGCTCCGAGAAGGAGCCGGCAGGAATCTACGCAGCACGAGCGACGAGCTCGAGGAGCCCGCAAGACCGACCGTGACCGCAATCACAG
GGACCACACACAGAGTGGGTCATTATTTATTACAATCTTTTTACTGTATATACGGCCATATGGGGCGGCCTTAGATAGATACTAGCAGCAAGCAGCGGAA
GAGAAGAAGACATGACGGAGCAGAAATACGTAGAAAGTACGTAGTACTGGTATTGCGGCAATACATAGTATTGTCTCTGCTGCTGGCTGCTGCTATACGG
TACGCTCAGTGAGCATGGCTTGCGGCAAGGTGGGGCGCGTGGCCATGGGCGTCATGCCGCATGCTTCCCTCCGCGCACGTGCCTTTCTTGAGGTAGACGC
ACGGAGCACCTGCCTGCTTGCTGGGCGCCGATTGTCGAGGAGATTGCTCGTCCACAGCCTTGTTGAGGTGGGTGCTCCGGCGGTCGTCGCCGGCCGGCGC
CTGGGAATCCATCGCCTATTAGCTCAACTGCTCCTCCTCCTCCTCCTCCTCCTCGAGCTCTTCCGGCACGAGGCCTCGT
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