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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_VHS_all.Contig1440
Contig Information
Length 1106 bp
Tissue Shoot with heat shock treatment
Clones 22 Clones [Download: CSV  ,  FASTA ]
whvh10f21    whvh10p03    whvh11i17    whvh2p13    whvh5i06    whvh6i04    whvh7e09    whvh13c09    whvh18n22    whvh19m13    whvh19m17    rwhvh10f21    rwhvh10p03    rwhvh11i17    rwhvh2p13    rwhvh5i06    rwhvh6i04    rwhvh7e09    rwhvh13c09    rwhvh18n22    rwhvh19m13    rwhvh19m17   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0869800 [Oryza sativa (japonica cultivar-group)] >gi|15408693|dbj|BAB64099.1| putative photosystem II subunit PsbS [Oryza sativa Japonica Group] >gi|20160872|dbj|BAB89811.1| putative photosystem II subunit PsbS [Oryza sativa Japonica Group] >gi|113534460|dbj|BAF06843.1| Os01g0869800 [Oryza sativa (japonica cultivar-group)] >gi|125528521|gb|EAY76635.1| hypothetical protein OsI_04589 [Oryza sativa Indica Group] >gi|125572786|gb|EAZ14301.1| hypothetical protein OsJ_004126 [Oryza sativa (japonica cultivar-group)] >gi|215701291|dbj|BAG92715.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737433|dbj|BAG96563.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215764949|dbj|BAG86646.1| unnamed protein product [Oryza sativa Japonica Group]
Score 833
Evalue 4.33655e-87
Total Hit Count 224
Registered year 2003
Contig Sequence     [ Download ]
>Wh_VHS_all.Contig1440 
AGCACCCCCACAGCCACAGCCACAGACGCGCGAAGCGATATCATCACGAGTGAGCGTCTAGGCGGGCATCCATGGCACAGTCGATGCTCATGTCCGGCGT
CAACGGCGTGGCCTCCGGCAGGAGCCTGCTGCAGGCGGCCCGGCCGTCGTCGGCGTCCACGCCCTTCTCGCGGCTCGCGCTCTCCTCCTCCTCGTCGGCG
GCAGCGTACTACAAGCACATGCCGTCCCTCTCCGTCCGGACCATGGCCCTGTTCGGCAAGAAGACCAAGGCCGCGCCGGCCAAGAAGGTCGTTGCCCCCA
AGCCCAAGACCGAGGACGGTATCTTCGGCACGTCCGGCGGGATCGGTTTCACCAAGGAGAACGAGCTCTTCGTCGGCCGTGTTGCCATGATTGGCTTCGC
CGCATCGATCTTGGGAGAGGCCATCACCGGCAAGGGCATCCTGTCCCAGCTGAACCTTGAGACCGGCATCCCGATCTACGAGGCGGAGCCCCTCCTCCTC
TTCTTCATCCTCTTTACCCTCCTCGGTGCCATCGGCGCGCTCGGAGACCGCGGCAGGTTCGTCGACGAGCAGCCCACCACCGGCCTCGACAAGGCCGTCA
TCGCCCCCGGCAAAGGCTTCCGCTCCGCCCTCGGTCTCAGCGAGGGAGGGCCGCTGTTCGGGTTCACCAAGTCGAACGAGCTGTTCGTGGGGCGGCTGGC
GCAGCTGGGGATCGCCTTCTCCATCATCGGGGAGATCATCACGGGCAAGGGCGCGCTGGCGCAGCTCAACATCGAGACCGGGGTGCCCATCAGCGAGATC
GAGCCGCTCGTGCTCTTCAACGTCGTCTTCTTCTTCATCGCCGCCATCAACCCCGGCACCGGCAAGTTCATCAGCGGCGAGGAGGACGACTAGATCACGC
GCGAATGCTTTTTGGCCATTAATTGTACGTCCGTCCGTCCGTGCTTTGCTTGTTTGTTGTGTACGTGAGACCTTGGGGTGTACTTAGGTGTAAGAAGTTG
GTCGTTGCCTTATGAAAAACAAGAGCTAGCAGCTAATTTGCCATGCATACCGACAGTTGCAAATCTATANTGGGGCGGATTCTTTGATCGTTCCCTTCTC
CCTTAA
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