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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25005  (registered. 2007)
Contig Information
Length 2839 bp
Clones 53 Clones [Download: TSV  ,  FASTA ]
Wh_DPA20 Seed DPA20 1
Wh_EMC Dormant seed with cold treatment after water absorption 2
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 2
Wh_KMP Shoot grown under continuous light 5
Wh_SHC Shoot grown with cold treatment 1
Wh_SHDr Shoot grown with dessication 2
Wh_V4816 Shoot grown under cold condition for 16days 3
Wh_V483 Shoot grown under cold condition for 3days 12
Wh_VABA Shoot with ABA treatment 12
Wh_VHS Shoot with heat shock treatment 2
Wh_VWD Shoot grown with dessication 11
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0848200 [Oryza sativa (japonica cultivar-group)] >gi|15408889|dbj|BAB64280.1| putative delta-1-pyrroline-5-carboxylate synthetase [Oryza sativa Japonica Group] >gi|113534333|dbj|BAF06716.1| Os01g0848200 [Oryza sativa (japonica cultivar-group)] >gi|215715215|dbj|BAG94966.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218189375|gb|EEC71802.1| hypothetical protein OsI_04432 [Oryza sativa Indica Group]
Score 2306
Evalue 0
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25005 
TCGCTGCCATCTAGACGCGTCCTTTGCACTCGCTGTCGAGTTTTCTTGGACGTATTGCAGAGCCTGAAGGGTTCTCAAGGTCTCATCCACACTGCGGCCA
ATACCAAGGTTGTTAATAGTGGAATGCTGAATCACACCCTCCTTGTCAATGATGAATAATCCTCTCAGAGCAATTCCCTGATCAGGCTTCCACCCACCTT
GACCTCGCCTCGCCTCGCCTCGCCCACCCGTTCTTTTTTTTCCTTGCCCGTCTCGATCCGGAGCGAGCGAGCGCCCGCGGGTCGCCACTCCCCGGCGAAG
CGGAGAATGGGCAGGGGAGGCATCGGAGGCGCCGTCGCGGCGGCGGACCTCGAGAACAGCGACTCCACCCGCGGCTTCGTCAGGGACGTCAAGCGCATCG
TCGTCAAGGTCGGCACCGCTGTTGTCACCGGGCAGAATGGCCGGCTGGCCATGGGCAGGCTCGGAGCTCTCTGCGAGCAGGTGAAGGAGCTCAATTTCCA
GGGGTATGAGGTGATTCTGGTCACCTCCGGCGCCGTTGGCGTCGGGAGGCAGAGGCTCAAGTACCGAAAGCTTATCAACAGCAGTTTCGCGGATCTGCAG
AACCCACAGTTGGACCTCGACGGGAAGGCCTGCGCTGCCGTCGGCCAGAGTGGCCTCATGGCTATCTACGATACGCTGTTTAGCCAACTTGATGTAACAT
CGTCTCAGCTTCTTGTTACGGATCGTGATTTCCGGGATCCAAGTTTTGGGCACCAGCTTCGTGAGACTGTTGTCTCCCTGTTAGATCTTAAGGTGATACC
GGTGTTTAACGAGAACGATGCTATCAGTACGAGGAGAGCGCCATACGAGGATTCATCCGGTATATTCTGGGATAACGACAGTTTGGCGACGCTGTTGGCA
AAAGAACTGGATGCTGATCTTCTTATCATGCTTAGTGATGTGGAGGGACTCTATAGTGGTCCACCGAGCGATCCTCAATCAAAGATTATCCACACATACA
TCAATGAAAAACACGGGAAGCTAATTAATTTTGGGGAGAAGTCTCGTGTGGGAAGAGGTGGAATGCAAGCTAAAGTGGCAGCTGCTGTTACTGCTGCATC
AAAGGGCGTACCTGCTGTAATTGCAAGTGGATTTGTAACAGATAGCATTATTAAGATTATGCGAGGAGAGAAAATTGGTACACTTTTCCATAATGAAGCA
AATGTCTGGGATTGTTCGAAGGAGGTGACAACCCGTGAGATGGCAGTTGCTGCAAAAGATTGTTCACGGCATCTCCAGAATTTGTCATCGGAGGAGCGTA
AGAAGATTTTGCTAGATATCGCCGGTGCTCTGGATGCAAATGTGGATTTAATTATATCCGAGAATGAAGCTGATCTAGCTGCGGCACAAGATTCAGGTTA
TGAGAAATCCTTGGTGGCTAGGATGACCCTGAAGGCAGGAAAGATAACAAGCCTTGCTGAATCGATCCGTGCAATTGCGGACATGGAGGACCCTATCTCA
CATACACTGAAAAAAACAGAGGTTGCTAAGGATTTAGTTTTCGAGAAGATGTACTGCCCATTGGGTGTTCTCCTAATTATTTTTGAGTCTCGTCCTGATG
CCCTGGTCCAGATTGCAGCTCTAGCAATCCGAAGTGGAAATGGCCTTCTTCTGAAAGGAGGAAAAGAAGCTATGAGATCAAACACAATATTACATAAGGT
CATAACCAGCGTGATTCCAGATGCTGTTGGTAAAAAGCTTATTGGCCTTGTGAAAAGCAAAGATGAAATTGCTGATCTTCTAAAGCTTGACGATGTGATT
GATCTTGTTATTCCAAGAGGCAGTAACAGGCTTGTTTCTCAAATCAAAGCACAAACCAAGATTCCCGTTCTTGGTCATGCTGATGGTATCTGCCATGTTT
ACATTGATAAATCAGCTGACATGGACATGGCAAAACGTATCGTATTGGATGCAAAGGTTGATTATCCTGCAGCATGCAATGGCTATGGAAACACTACTTG
TTCATAAAGATCTGAACAAGACAGAGGGTCTTGATGATTTATTGATGGAACTTGCGAAAGAAGGAGTTGTTATTTATGGTGGGCCTGTCGCACATGACAC
ATTGAAAGTACCAAAGGTGGATTCATTTCATCATGAGTATAGCTCAATGGCATGCACCCTCGAATTTGTTGATGATGTGCAGTCAGCGATTGACCATATA
AATCGTTATGGAAGTGCACACACAGATTGTATTATCACAACTGATAAGAAGTCAGCAGATACTTTTCTACAACAAGTTGACAGTGCTGCTGTGTTCCATA
ATGCAAGCACAAGGTTCTGTGATGGGACTCGCTTCGGTCTAGGTGCAGAGGTTGGCATAAGTACAGGGCGCATACATGCTCGTGGACCTGTTGGTGTCGA
CGGTCTTTTAACCACTCGGTGCATTCTTCGAGGGAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTGTACACCCACAAGGATCTTCCTTTGCAATGA
GGGTAGAGGATTCCTGCTGTAGAGCAATTTTTGTAGAATAATCCTCTTCAAAGCCCCCTTCTCTCTGTGCGAGGAATGAAGAAAGACAAGAGAGCATTGT
TGTTACTATGTCGCTATCTAGTTCCGTGATTGTTCGTGTACAATGATTTATCCATACAATGTCCTAGTTATGGCACTAGTTGTTGTAACTGTAGAATTGC
ATCGGTACATCTATGCTACATATATGAAGTAGCTGTACTGTTTCTGATGAAGTCTCGAATCCGTTGTCATGTTGTCTTTCTATGGCAAAGAGCACCTGAA
ATGAATGCAATGGGTGTGCAGCCTTCTTGAAAAAAAAAA
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