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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25370  (registered. 2007)
Contig Information
Length 1427 bp
Clones 189 Clones [Download: TSV  ,  FASTA ]
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 4
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 5
Wh_MS Seed DPA5 of DT3DL CS wheat 6
Wh_OKCS Seed DPA5 12
Wh_PCDAM Anther at meiosis 6
Wh_V4816 Shoot grown under cold condition for 16days 43
Wh_V483 Shoot grown under cold condition for 3days 43
Wh_VABA Shoot with ABA treatment 2
Wh_VHS Shoot with heat shock treatment 27
Wh_VWD Shoot grown with dessication 41
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|122246902|sp|Q10HD0|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|152013384|sp|A2XJ35|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa (japonica cultivar-group)] >gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group] >gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_011145 [Oryza sativa (japonica cultivar-group)]
Score 1170
Evalue 1.5598e-126
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25370 
CTCCATCCATAGTGGAGATAGATGAAGCAATTACAGGGTACACATGCACACACATACACACAAGGTACACCAAGGGCAGAGCATAGGCGGAGAGCGAGCG
AAGTAAACCACACGCACATGCACACGCACCCTTGCTCGACTCCATCAGATCAGACGCTCGTTATTCACGTATACTCTCACACCATCACACGTACGTACGA
CGGTACGAGTGCATGCAGCTTAACAGTTGCAGGGGTTGCACTTGCAGTTGTCGCCGCAGCTGCAGCCCTCGCCGGACTGGCCGGCGGCCACCTCGAACTG
ACCTGCCTTGTTCTCAGGCGCCACGCCGAGGACGACCACGGCGACCATCCACCAGTTCATCTCACTGAGCTCGCAGGCAGCCCTAGCCACCAGCGAAATG
GCCGCGTCGGCGCTGCACCAGACGACCAGCTTCCTCGGCACCGCCCCGCGGCGCGATGACCTCGCTCCGCAGCGTCGGCGACTTCGGCGGCCGCATCACC
ATGCGCCGGACCGTCAAGAGCGCGCCCCAGAGCATCTGGTACGGCCCTGACCGTCCCAAGTACCTGGGCCCGTTCTCCGAGCAGACCCCGTCGTACCTGA
CCGGCGAGTTCCCCGGCGACTACGGATGGGACACCGCCGGATTGTCGGCTGACCCAGAGACCTTCGCCAAGAACCGGGAGCTGGAGGTGATCCACTCGCG
GTGGGCGATGCTCGGCGCCCTGGGCTGCGTGTTCCCGGAGATCCTGTCCAAGAACGGCATCAAGTTCGGCGAGGCCGTGTGGTTCAAGGCCGGCGCCCAG
ATCTTCTCCGAGGGCGGCCTCGACTACCTGGGCAACCCCAACCTGGTGCACGCGCAGAGCATCCTGGCCATCTGGGCGGTTCAGGTGGTGCTCATGGGCT
TCATTGAGGGTTACCGTGTTGGTGGCGGCCCCCTCGGCGAGGGCCTCGACATCATCTACCCGGGCGGCGCCTTCGACCCGCTTGGCCTCGCCGACGACCC
CGACACCGCCGCGGAGCTCAAGGTCAAGGAGCTCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCCATCGTCACCGGAAAG
GGACCCGTTGAGAACCTCTTCGACCATGTCGCTGACCCGGTCAACAACAACGCGTGGGCCTTTGCCACCAACTTCGCCCCCGGAAGCTAAATGTGTTTAG
CCATCCGTCCGTCCGTCCGTCCATCGGACGAGATATGCATGTGTACTTGTACGTCGTGGATCAAGCGTGTAGCTGCACGTACTTTGTGTGTTTATTTGTA
CCATGATCGAGCGAGCGAGAGGTCCTCTCTCTGGCTGTGCGCAATGTAAATTAATTAAGCCCAACGTGTGCACGAGGGAATGGATGGAAGAATCGTGTGT
CATTACTCAAGATCATCAAAAAAAAAA
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