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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig3161  (registered. 2012)
Contig Information
Length 868 bp
Clones alternative view 183 Clones [Download: TSV  ,  FASTA ]
Wh_dL Crown of seedling 1
Wh_e Seed DPA10 4
Wh_f Spike at flowering date 6
Wh_h Spike at heading date 9
Wh_oh Pistil at heading date 1
Wh_r Root 7
Wh_yd Spikelet at late flowering 9
Wh_CSEC Callus 3
Wh_DPA20 Seed DPA20 2
Wh_EMI Dormant seed with water absorption after breaking 2
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 2
Wh_KMP Shoot grown under continuous light 2
Wh_MS Seed DPA5 of DT3DL CS wheat 10
Wh_OKCS Seed DPA5 6
Wh_PCDAM Anther at meiosis 4
Wh_RDr Root of dessiccated seed 2
Wh_SHC Shoot grown with cold treatment 4
Wh_SHDr Shoot grown with dessication 6
Wh_V4816 Shoot grown under cold condition for 16days 4
Wh_V483 Shoot grown under cold condition for 3days 1
Wh_VHS Shoot with heat shock treatment 1
Wh_VSCB Liquid cultured tissue 2
Wh_VWD Shoot grown with dessication 2
WH_XM Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 9
WH_XN Leaves, plant was grown at constant 23℃ 2
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23℃ ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 8
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 16
WH_XT Roots, 18 day old plants were grown hydroponically 4
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 8
WH_SP 2
WH_XA Root 6
WH_XB Root 6
WH_XC Root, treated at 50 microM Al for 6h 5
WH_XD Root, treated at 50 microM Al for 6h 18
WH_XE Seedling, infected with leaf rust 1
WH_XF Seedling, infected with leaf rust 3
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27℃ ) 3
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115454651|ref|NP_001050926.1|| Os03g0685500 [Oryza sativa (japonica cultivar-group)]
Score 221
Evalue 6.00E-56
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig3161 
CCACTCCATCTGGTGCTGCACTTGTGGCAAGCATATTTAAAGGGAACAACGGATTACAGATGCATTTTTTTTTTCAAGCTCTCAAAACCATACAAATAAA
TGAAGTCGCTTTTTTTTTTATTCAAACTCCATATTTATAAACCCACTGCCATGAAGGTAATTCCAACATCAATACAAGGAAATACTCCCGGGACAACAGA
GACCACGAACTAGGGTAGGTAATAGACACAAGCTGTGGCATAGGTTCATAATATTGCCAATGAATTATTTAGGAGATATATATCATCATCATCATGACTG
AAAACAGGTTCTGCCCAATTAAGCCCCAATCAAGCAAAGATAGTAGCTTAAAGAGTTGCTCCTCCACGGCGGCACTCGTTCAGCATGTCAAGGTAGAACT
GGCACTTGCTGATATCGCTTCCGTAGTGGTTGATGCAATCTTGGAAGGCCTTGGAAGGGTTGCCACACTTGTCATCAGCAGCATTGTCCATTGGAGTCAT
AGATGCAGCAGCCTCACCGACAACAGTCTCATGCTGAATGGTACGGGGACCCATCACAGCATCAACAGCCCTGTGCGCCATGGCACTTCCAGTACCGAAA
GCCATGCCCTGAGCAATGGTGGACCCAATCCCGCTCATGATACCACCACCGCTGCTCTGGGTGGTAGCAGGTGGAGGAGCTGGACGGGCTGGCGCTGGTG
GGTTTCTCACTGGAGCAGCACGTGGAGCAGGGCGGGAAGACCTTCCTCCTCCGCTGCGGCGGGCCATGGCGGCGGGTGGGGCGGACGGGCGGCGGGAGGA
AACCCTAGGCTGGAGGCGGCGCCGGGAGGGGGATCGGATGAACAGAAGCCAACGGATCGGCCTCGTGC
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