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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig15943  (registered. 2007)
Contig Information
Length 710 bp
Clones 38 Clones [Download: TSV  ,  FASTA ]
Wh Spike at meiosis 10
Wh_SL Seed DPA30 7
Wh_e Seed DPA10 7
Wh_f Spike at flowering date 4
Wh_oh Pistil at heading date 4
Wh_yd Spikelet at late flowering 5
Wh_yf Spikelet at early flowering 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0918300 [Oryza sativa (japonica cultivar-group)] >gi|2501449|sp|P55857|SMT3_ORYSJ RecName: Full=Ubiquitin-like protein SMT3 >gi|1668773|emb|CAA67922.1| ubiquitin-like protein [Oryza sativa] >gi|18146762|dbj|BAB82439.1| ubiquitin-related protein [Oryza sativa Japonica Group] >gi|19386713|dbj|BAB86095.1| putative SUMO protein [Oryza sativa Japonica Group] >gi|57900450|dbj|BAD87743.1| putative SUMO protein [Oryza sativa Japonica Group] >gi|113534738|dbj|BAF07121.1| Os01g0918300 [Oryza sativa (japonica cultivar-group)] >gi|125528873|gb|EAY76987.1| hypothetical protein OsI_04943 [Oryza sativa Indica Group] >gi|125573116|gb|EAZ14631.1| hypothetical protein OsJ_004456 [Oryza sativa (japonica cultivar-group)] >gi|149390685|gb|ABR25360.1| ubiquitin-like protein smt3 [Oryza sativa (indica cultivar-group)] >gi|215765122|dbj|BAG86819.1| unnamed protein product [Oryza sativa Japonica Group]
Score 460
Evalue 3.43411e-44
Total Hit Count 437
Registered year 2007
Contig Sequence     [ Download ]
>Contig15943 
gcTCGGGTCCGCCGCACAG*ACTCGAGTCATCTTCTTCCTCTGCTCCTGCTCGGATCCCATACCCTGCTCCTCAACCCCCTT*CGCGGCGCGGCGCGGCG
CGGCACAGCACAG*AGGAGTCGGCGG*AG*ATGTCGGG*AGTGACGGCGGACGAGG*ACAAG*AAGCCCGCGGGCGACGGTGGAGGCGCCCACATCAACC
TCAAGGTCAAGGGGCAGG*ATGGCAATGAGGTTTTCTTCCGCATCAAGAGATCCACACAGCTGAAGAAGCTGATGAACGCTTACTGCGACCGTCAGTCTG
TGGATCTCAACTCCATTGCTTTCCTTTTTGATGGTCGTAGGCTCCGTGGTGAGCAGACCCCTGATGAGCTTGAGATGGAGGAAGGCGACGAGATCGACGC
CATGCTTCACCAGACCGGAGGGTGCTTTCCTGGCCCTTAGAAGGAGCTTGCTGCAGCCTGGCTGTTCTATGTCGTATGCTACCTTTAGAACTAGAGTAAA
ATGTAAGAAGTGAAAGAACTTGTGAGGCTATGGT*T*CTGTGCCATAGCCTGAGGGGGGGT*C*TGGAGGTGAAACAACATCGGAGTA*CTGTTGATGT*
CGTGACTGAACTATCATCCATTGCCTAATATATCATG*CCTTGTTGTGTTCCCAGTGATTTGcaaactcatttggtttctcatcgtagtgaggcatcatt
ttctgtcttg
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