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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_VWD_all.Contig1933
Contig Information
Length 1353 bp
Tissue Shoot grown with dessication
Clones 70 Clones [Download: CSV  ,  FASTA ]
whvd10b02    whvd10b13    whvd11a02    whvd11a16    whvd11l12    whvd12f10    whvd1m15    whvd1o23    whvd2l06    whvd2l08    whvd2m20    whvd3b15    whvd4c11    whvd4h16    whvd5d14    whvd6h09    whvd13o22    whvd14d15    whvd14m02    whvd15e11    whvd15e12    whvd15f19    whvd16n03    whvd17a16    whvd17k07    whvd17m09    whvd17o23    whvd17p06    whvd18f03    whvd19a13    whvd19m17    whvd19m18    whvd20e08    whvd20i19    rwhvd10b02    rwhvd10b13    rwhvd11a02    rwhvd11a16    rwhvd11l12    rwhvd12f10    rwhvd12j22    rwhvd1l14    rwhvd1o23    rwhvd2l06    rwhvd2l08    rwhvd2m20    rwhvd3b15    rwhvd4c11    rwhvd4h16    rwhvd5d14    rwhvd6h09    rwhvd13o22    rwhvd14d15    rwhvd14m02    rwhvd15e11    rwhvd15e12    rwhvd15f19    rwhvd16n03    rwhvd17a16    rwhvd17k07    rwhvd17k08    rwhvd17m09    rwhvd17o23    rwhvd17p06    rwhvd18f03    rwhvd19a13    rwhvd19m17    rwhvd19m18    rwhvd20e08    rwhvd20i19   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|113535731|dbj|BAF08114.1| Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group] >gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_005582 [Oryza sativa (japonica cultivar-group)] >gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1080
Evalue 1.3235e-115
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_VWD_all.Contig1933 
AAGCGTTCTTCGCTAAGGTCAGGAACATTTACGAGGATATAATCAGCGGCTAGACGATGAAGCACTTGAAAAGGTGCATCCCAGTTGAGAGAAGCACAAA
GTACTCAAAACGGAGACGTGCAATTACTGTATATCTGTACTATATATTTGAGCATAGCATCTAATATAATCCTTACTCAATTGTATATCTAAATAAGTTG
GACATATTGACGCAAAAAACTTTTGATGTGTTTAGCCACCATCTCCCAACACACACCACGCCTGCCTCATCTCTCGGAGCAGGAGGAGGAGGAGCTTGCA
GGAACAATGGCGGCCCAGGGTCTTCTCTCTGGGAGGCAGCTGCTGGGGAGGCCTCTGCAGTCTTCCATCTCCAGGTCGTCTTCCTCCCGGAAGTCCCCCT
TCGTCGTCAGGGCATCTTCCAGCCCCCCTGCCAAGCAAAATGACAACAGGCAGCTGTGGTTTGCGTCCAAGCAGTCCCTCACCTACCTCGACGGCACGCT
GCCCGGTGACTTTGGCTTCGACCCCTTGGGGCTGTCCGACCCAGAGGGCACCGGCGGGTTCATCGAGCCCAGGTGGCTGGCCTACGGCGAGATCTTCAAC
GGCCGGACGGCGATGATGGGGGTGGTGGGCATGATCGCCCCGGAGGCCCTGGGCAAGGTGGGTCTGGTGCCCCCGGAGACGGCGATCCCGTGGTTCCAGG
CCGGCGCGATCCCGCCAGCGGGCACCTACCAGTACTGGGCCGACCCCTACACGCTCTTCGTGTTCGAGATGGCGCTCATCGGCTTCGCGGAGCACCGGCG
GCTCCAGGACTGGTACAACCCGGGCTCCATGGGGAAGCAGTACTTCCTGGGCCTCGAGAAGTACCTCGGTGGCTCCGGCGACCCCGCCTACCCCGGCGGG
CCCATCTTCAACCCGCTCGGGTTCGGCACCAAGAGCGAGAAGGAGATGAAGGAGCTCAAGCTCAAGGAGATCAAGAACGGCCGCCTCGCCATGCTCGCCT
TCCTCGGCATGTCCCTGCAGGCCATCTTCACCGGCGTCGGGCCCTTCCAGAACCTCCTCGACCACCTCTCCGACCCCGTCAACAACAACATCCTCACCAG
CCTCAAGTTCCACTAGGCGAAATCGATCCGATCCGATCCGAGCATCGTCGTCCTGTGCATGGTACCCGTCGTCGTGGGAAAGCGTGAGCGTGCGAGAGGT
ATACATGCGAGGGTGGGTGTAAAATGTAAATTTGTAGCGCGTGCTGCGTGCATGCCTTGTAATATTTATATCGTGCTATGAAAATTAGTGCATTGCATCT
CTCATCATCTTCACCAACCAAAAAAAAAAAAAAAAANNTNANGGGGGGNCCGG
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