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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig12162  (registered. 2012)
Contig Information
Length 1099 bp
Clones alternative view 38 Clones [Download: TSV  ,  FASTA ]
Wh_e Seed DPA10 1
Wh_oh Pistil at heading date 1
Wh_SH - 3
Wh_OKCS Seed DPA5 2
Wh_SHC Shoot grown with cold treatment 4
Wh_SHDr Shoot grown with dessication 4
Wh_VWD Shoot grown with dessication 3
WH_XL Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 1
WH_XN Leaves, plant was grown at constant 23℃ 1
WH_XP Leaves, seedling were infercted with blast strain Pr58 for 4 days (23℃ ) 2
WH_XR Roots, 18 day old plants were grown hydroponically 2
WH_XS Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 3
WH_XU Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 2
WH_XA Root 1
WH_XB Root 2
WH_XC Root, treated at 50 microM Al for 6h 1
WH_XF Seedling, infected with leaf rust 2
WH_XG Seedling, infected with powdery mildew (AvrPm3b) 1
WH_XY Leaves, seedling were infercted with blast strain Pr58 for 4 days (27℃ ) 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit gi|115456011|ref|NP_001051606.1|| Os03g0803000 [Oryza sativa (japonica cultivar-group)]
Score 411
Evalue 6.00E-113
Total Hit Count 1
Registered year 2012
Contig Sequence     [ Download ]
>Contig12162 
CCTCCCCTCCCGCAGCAGCCTCGCCGAGATCCAATCCGGCTGCCCCCCAACTCCCCCACCGGCGGCGAGCGACTCGGCGAGAGGGAGAGAGCGAGGGCGG
AGCGAGGACGAGCGGGCGGAGCCATGGGGCAGCAGTCGCTGATCTACGCGTTCGTGGCCCGCGGCACGGTGGTGCTTGCCGAGTACACCGAGTTCACCGG
AAACTTCACCACCATCGCCTCCCAGTGCCTCGTCAAGCTCCCGGCCAGCAACAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAACTACCTCGTC
GAGGACGGCTTCACATACTGCGTGGTTGCCGTTGAATCAGTGGGGCAACAGATGCCAATTGCTTTCTTGGTTCGGGTTAAGGATGATTTCAGCAAGAGAT
ATGCTGGCGGGAAAGCTGCTACTGCTGCACCAAGCAGCCTGAACAGAGAGTTTGGATCAAAACTCAAGGAGCACATGCAGTACTGTGTGGACCACCCTGA
AGAGATAAACAAGCTCGCTAAAGTGCAAGCACAAGTTTCAGAAGTCAAAAACGTGATGATGGAAAACATTGAGAAGGTTCTTGATCGTGGGGAGAAGATT
GAGCTGCTTGTTGACAAGACAGAGAATCTCCGCTCACAGGCCCAAGATTTCAGGCAGCAAGGAACACAGGTGAGGAGAAAGATGTGGCTACAAAACATGA
AGATCAAGCTGATCGTCCTGGGCATCATCGTCGCGCTCATCCTCATCATAATCCTGTCGGTGTGCCACGGATTCAACTGCGGCAAGAAGTGAGGACAAGT
CGAGGTCGTGAGACACATTCAACTGCCCCTATATTACTCTGCTGATTCGAGCAAAAACCATATATATGGTGCTTAGTTCTTTTCTTGTTTAGTGTGCGCT
GGCCCGGGCCGTGGTGCCTGTGGGTGGGTCTGTGTTTTCGTTGTCGTCGTGTTGGGATGTTCGGTTACCGCTGGATGGGTGGTGGCTGGGTCGGCGGGTC
GTGTATTTTTGGACGCTATGTATGTATAGCTTGGATCTTGACGCCTTTGTTCTATTGTTATATGATGATGATGAGTAGTAGATTTACTTAAAAAAAAAA
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